Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0209.Seq
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   146   3e-36
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.3  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    25   7.0  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   9.2  
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    25   9.2  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  146 bits (353), Expect = 3e-36
 Identities = 67/106 (63%), Positives = 85/106 (80%), Gaps = 1/106 (0%)
 Frame = +1

Query: 202 KNRQTREHLLVFFTNQRIEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 381
           K +   E  L     +  +I+D+FL P LNDEV+K++PVQKQTRAGQRTRFKAFV IGD+
Sbjct: 48  KIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDS 106

Query: 382 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGS-HT 516
           +GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGYWG  +G  HT
Sbjct: 107 DGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHT 152



 Score = 77.4 bits (182), Expect = 2e-15
 Identities = 32/43 (74%), Positives = 39/43 (90%)
 Frame = +3

Query: 510 PHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGV 638
           PHTVP KV+GKCGSVTVRL+PAPRG G+V+APV K+ LQ+AG+
Sbjct: 150 PHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGI 192



 Score = 62.9 bits (146), Expect = 4e-11
 Identities = 26/37 (70%), Positives = 33/37 (89%)
 Frame = +2

Query: 143 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIKE
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKE 64


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 140 RAHDHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 15
           ++HDHG  H + H DR      +  R  R++R     ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 468 NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSG 334
           +R LS     + GSG     L    N+T+ +A+G     T  +SG
Sbjct: 373 SRNLSSSLQQTGGSGRLFVRLMEIRNLTIPLASGMTTRFTYTISG 417


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = -2

Query: 513 VASDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSG 334
           +++  VTP +SS+  + ++    +A   +    A+ HT  N   +V     C+    +  
Sbjct: 250 ISTVTVTPSSSSSSTSSEVPSSTAALALNAS-KASNHTSLNAGAIVGIVIGCVAFAVVMA 308

Query: 333 TCLFLY 316
            C+FLY
Sbjct: 309 LCIFLY 314


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 181 RPSCSRRKNRQTREHLLVFFTNQRIEIIDFFLGPSLNDE 297
           R    +++NR+T +  LV  T       +FF  P L+D+
Sbjct: 265 RVETKKQRNRKTNQTRLVRTTVPNDSFFNFFSPPQLDDD 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,590,986
Number of Sequences: 5004
Number of extensions: 54101
Number of successful extensions: 136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)