Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0209.Seq
(640 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 149 2e-36
07_01_0756 + 5819367-5820038,5820847-5821005 144 4e-35
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 60 1e-09
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 1e-05
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 3.1
08_02_0675 + 19929932-19930005,19930116-19930222,19931604-199319... 29 4.1
05_07_0003 + 26981956-26982190,26982258-26982318,26982739-269828... 28 5.4
08_01_0312 + 2764744-2767390,2767632-2767990 27 9.5
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 149 bits (361), Expect = 2e-36
Identities = 70/82 (85%), Positives = 75/82 (91%), Gaps = 1/82 (1%)
Frame = +1
Query: 274 LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 453
L P L DEV+KI PVQKQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAIIL
Sbjct: 81 LVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIIL 140
Query: 454 AKLSVLPVRRGYWGNKIGS-HT 516
AKLSV+PVRRGYWGNKIG HT
Sbjct: 141 AKLSVVPVRRGYWGNKIGQPHT 162
Score = 84.2 bits (199), Expect = 8e-17
Identities = 35/44 (79%), Positives = 42/44 (95%)
Frame = +3
Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGV 638
+PHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+
Sbjct: 159 QPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGI 202
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/37 (62%), Positives = 33/37 (89%)
Frame = +2
Query: 143 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253
++++++WVPVTKLGRLV+EG+ K+E IYL SLP+KE
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKE 74
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 144 bits (350), Expect = 4e-35
Identities = 68/82 (82%), Positives = 74/82 (90%), Gaps = 1/82 (1%)
Frame = +1
Query: 274 LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 453
L P L DEV+KI PVQKQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIIL
Sbjct: 84 LVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIIL 143
Query: 454 AKLSVLPVRRGYWGNKIGS-HT 516
AKLSV+PVRRGYWGNKIG HT
Sbjct: 144 AKLSVVPVRRGYWGNKIGKPHT 165
Score = 85.8 bits (203), Expect = 3e-17
Identities = 36/44 (81%), Positives = 42/44 (95%)
Frame = +3
Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGV 638
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+
Sbjct: 162 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAHVPKKVLQFAGI 205
Score = 59.7 bits (138), Expect = 2e-09
Identities = 24/37 (64%), Positives = 33/37 (89%)
Frame = +2
Query: 143 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253
++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKE 77
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 60.1 bits (139), Expect = 1e-09
Identities = 26/45 (57%), Positives = 34/45 (75%)
Frame = +3
Query: 504 RKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGV 638
RKPHTV CKV K GSVTVR++ P G+ +V+ VPKK+L+ AG+
Sbjct: 46 RKPHTVSCKVADKYGSVTVRMMLPPMGSSVVATRVPKKVLKFAGI 90
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +1
Query: 361 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILA 456
FV +GD + HI LGVKC+K AT + GAIILA
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA 31
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = +1
Query: 289 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 468
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 469 LPV 477
+ V
Sbjct: 231 VTV 233
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 423 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 307
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>08_02_0675 +
19929932-19930005,19930116-19930222,19931604-19931986,
19932306-19932386,19933249-19933281
Length = 225
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +2
Query: 332 VPDSAHVSRHLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCLFYQFEEVTGVTRSEA 511
VP + +SR L A I W + ++ F+ LSL+SC+++ E++ ++R+
Sbjct: 156 VPSAEIISRRL---ALFAFIAGWSIVTSAETGPTFQLALSLVSCIYFLNEKMKNLSRASM 212
Query: 512 T 514
T
Sbjct: 213 T 213
>05_07_0003 +
26981956-26982190,26982258-26982318,26982739-26982833,
26983304-26983479,26983738-26983959,26984041-26984279,
26984786-26985311,26985407-26985680,26985759-26986410,
26986508-26986736,26986841-26987107,26987180-26987443,
26987526-26988194
Length = 1302
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 452 LLSCLFYQFEEVTGV-TRSEATHRPLQSHRQVWFCNSPADSCPSWYWNC 595
L++ +F + + G +R + HR ++ +VWF A S P W C
Sbjct: 51 LMNLVFGEVVDAFGSGSRDDVLHRVSKAPAEVWFLRRAATSRPIDAWKC 99
>08_01_0312 + 2764744-2767390,2767632-2767990
Length = 1001
Score = 27.5 bits (58), Expect = 9.5
Identities = 20/42 (47%), Positives = 23/42 (54%)
Frame = +2
Query: 341 SAHVSRHLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCL 466
+ HV LLPLAT T +A +PLP ALLSL S L
Sbjct: 5 AVHVLLLLLPLATIT--------SASSAPLPLLALLSLRSSL 38
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,984,396
Number of Sequences: 37544
Number of extensions: 401798
Number of successful extensions: 1230
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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