Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0209.Seq
         (640 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)              171   3e-43
SB_53611| Best HMM Match : Homeobox (HMM E-Value=1.2e-25)              31   0.60 
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.60 
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)                     31   0.60 
SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)                  29   2.4  
SB_36678| Best HMM Match : Aa_trans (HMM E-Value=1.8e-07)              29   3.2  
SB_20635| Best HMM Match : rve (HMM E-Value=0.91)                      29   3.2  
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_52533| Best HMM Match : rve (HMM E-Value=2)                         29   3.2  
SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)                  29   3.2  
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)                     29   3.2  
SB_48476| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)                 28   5.6  
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 28   5.6  
SB_6385| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.00099)        28   7.4  
SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)                 27   9.7  
SB_20714| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_17882| Best HMM Match : ShTK (HMM E-Value=1e-05)                    27   9.7  

>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score =  171 bits (417), Expect = 3e-43
 Identities = 84/104 (80%), Positives = 92/104 (88%), Gaps = 2/104 (1%)
 Frame = +1

Query: 211 QTREHLLVF-FTNQRIEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 387
           +T EH+ +F    +  EIIDFFLG +L DEVLKIMPVQKQTRAGQRTRFKAFVAIGD+NG
Sbjct: 24  KTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNG 83

Query: 388 HIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGS-HT 516
           H+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG  HT
Sbjct: 84  HVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHT 127



 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 41/44 (93%), Positives = 42/44 (95%)
 Frame = +3

Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGV 638
           KPHTVPCKVTGKCGS  VRLIPAPRGTGIVSAPVPKKLLQMAG+
Sbjct: 124 KPHTVPCKVTGKCGSTRVRLIPAPRGTGIVSAPVPKKLLQMAGI 167



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 25/31 (80%), Positives = 27/31 (87%)
 Frame = +2

Query: 161 WVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253
           WVPVTKLGRLV++ KI  LE IYLFSLPIKE
Sbjct: 8   WVPVTKLGRLVKDLKIKTLEHIYLFSLPIKE 38


>SB_53611| Best HMM Match : Homeobox (HMM E-Value=1.2e-25)
          Length = 389

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 17/72 (23%), Positives = 29/72 (40%)
 Frame = +2

Query: 359 HLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCLFYQFEEVTGVTRSEATHRPLQSHR 538
           H +   T   +  W+    R   + +E   ++L  LFY          S  T  P  +H 
Sbjct: 199 HTISTWTIRGVSRWISYLTRCFTVLYEVFHNILYGLFYSITRGEPAYHSYWTMSPYSAHA 258

Query: 539 QVWFCNSPADSC 574
           Q + CN+  ++C
Sbjct: 259 QSYICNTSCEAC 270


>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1049

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = -2

Query: 462 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL*NLIIQG 283
           ++ + NS  N   D        TNMT + + G  CL     + TC+ L   DL NL+ + 
Sbjct: 235 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 292

Query: 282 RAEEEI 265
           R ++E+
Sbjct: 293 RNQDEL 298


>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 657

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = -2

Query: 462 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL*NLIIQG 283
           ++ + NS  N   D        TNMT + + G  CL     + TC+ L   DL NL+ + 
Sbjct: 519 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 576

Query: 282 RAEEEI 265
           R ++E+
Sbjct: 577 RNQDEL 582


>SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)
          Length = 280

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/44 (43%), Positives = 23/44 (52%)
 Frame = -2

Query: 435 NGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL 304
           N  G  LA  +   N+  +V NG K  + C LS T L LY HDL
Sbjct: 108 NAYGKSLAEFYNSNNL--IVLNGVK--QGCMLSPTLLNLYVHDL 147


>SB_36678| Best HMM Match : Aa_trans (HMM E-Value=1.8e-07)
          Length = 956

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +2

Query: 524 LQSHRQVWFCNS-PADSCPS 580
           LQSHR  WFC S P  +CP+
Sbjct: 87  LQSHRHPWFCVSCPTVTCPT 106


>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
          Length = 748

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 289 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 402
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 155 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 192


>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 945

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 289 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 402
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 811 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 848


>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2211

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 289  NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 402
            N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 2008 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 2045


>SB_52533| Best HMM Match : rve (HMM E-Value=2)
          Length = 212

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 289 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 402
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 95  NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 132


>SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)
          Length = 212

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 289 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 402
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 9   NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 46


>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
          Length = 735

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 289 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 402
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 532 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 569


>SB_48476| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 370

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
 Frame = +2

Query: 461 CLFYQFEEVTGVTRSEATHRPLQSHRQVWFC-----NSPA--DSCPSWYW 589
           C   ++E+ T V      H P+ S R VW C     N+    D  PSW W
Sbjct: 95  CWDTEYEQPTLVEVHSEDHAPVISERYVWQCLQHLKNTATGPDLIPSWIW 144


>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
          Length = 1130

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 339 TAHTFQGICCHWRQQRSYW 395
           TA  +  ICCH +Q + +W
Sbjct: 486 TADQYDAICCHTQQSKKFW 504


>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 897

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 337 GQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 426
           G++ + K F+A+G  NGH+     C  ++A
Sbjct: 356 GRKDKRKDFLALGLRNGHVEFRFSCGADIA 385


>SB_6385| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.00099)
          Length = 437

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 20/72 (27%), Positives = 35/72 (48%)
 Frame = +1

Query: 160 VGSCHQTRPSCSRRKNRQTREHLLVFFTNQRIEIIDFFLGPSLNDEVLKIMPVQKQTRAG 339
           +G+  +  P  S+RK ++  +   +  T +RI       GP   D+ +  +  +K+TRAG
Sbjct: 14  LGAHGEVGPCASKRKRKKVSKE--IDCTGKRISTT---FGPIEPDKRMATVASKKKTRAG 68

Query: 340 QRTRFKAFVAIG 375
            R     F+A G
Sbjct: 69  HRAFVTRFMAEG 80


>SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)
          Length = 1683

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +1

Query: 316  VQKQTRAGQRTRFKAFVAIGDNNGHIGLGV--KCSKEVATAIRGAIILAKLSVLPVRRGY 489
            +Q+ TR  +RT         +NN ++ LG+   C   + TA+ G     +L+ + ++ G 
Sbjct: 1460 IQENTRTSRRTDISYRQLQANNNKNLELGIWRHCGPAILTALSG----RRLACVKIQAGP 1515

Query: 490  W 492
            W
Sbjct: 1516 W 1516


>SB_20714| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 494

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = +2

Query: 491 GVTRSEATHRPLQSHRQVWFCNSPADSCPSWYW-NCVC 601
           G TR         + ++ W  N P  +C   +W NC+C
Sbjct: 335 GPTRETDAFMQKDTLQRQWQTNCPLQNCTMQFWTNCIC 372


>SB_17882| Best HMM Match : ShTK (HMM E-Value=1e-05)
          Length = 387

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +1

Query: 316 VQKQTRAGQRTRFKAFVAIGDNNGHIGLGV--KCSKEVATAIRGAIILAKLSVLPVRRGY 489
           +Q+ TR  +RT         +NN ++ LG+   C   + TA+ G     +L+ + ++ G 
Sbjct: 274 IQENTRTSRRTDISYRQLQANNNKNLELGIWRHCGPAILTALSG----RRLACVKIQAGP 329

Query: 490 W 492
           W
Sbjct: 330 W 330


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,557,475
Number of Sequences: 59808
Number of extensions: 456797
Number of successful extensions: 1473
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1472
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)