Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0209.Seq
(640 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 141 3e-34
Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical pr... 29 3.7
AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear recep... 28 4.9
AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormo... 28 4.9
AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein. 28 6.5
AF003135-5|AAK18990.1| 678|Caenorhabditis elegans Hypothetical ... 28 6.5
AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical ... 28 6.5
AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical ... 28 6.5
U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer am... 27 8.6
U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer am... 27 8.6
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 141 bits (342), Expect = 3e-34
Identities = 71/91 (78%), Positives = 78/91 (85%), Gaps = 1/91 (1%)
Frame = +1
Query: 247 QRIEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 426
+ EIID L +L DEVLKI PVQKQT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVA
Sbjct: 86 KEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVA 144
Query: 427 TAIRGAIILAKLSVLPVRRGYWGNKIG-SHT 516
TAIRGAI+ AKL+V+PVRRGYWGNKIG HT
Sbjct: 145 TAIRGAIVAAKLAVVPVRRGYWGNKIGLPHT 175
Score = 87.8 bits (208), Expect = 6e-18
Identities = 39/43 (90%), Positives = 40/43 (93%)
Frame = +3
Query: 510 PHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGV 638
PHTVPCKVTGKC SV VRLIPAPRGTGIVSAPVPKKLL MAG+
Sbjct: 173 PHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGI 215
Score = 55.2 bits (127), Expect = 4e-08
Identities = 26/36 (72%), Positives = 28/36 (77%)
Frame = +2
Query: 146 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253
E + EW PVTKLGRLV+E KI LE IYL SLPIKE
Sbjct: 52 EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKE 87
>Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical
protein C30F2.3 protein.
Length = 403
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 486 TSSNW*NRQLSKDNSASNGSG 424
TS+NW N QL NS + GSG
Sbjct: 309 TSTNWQNNQLGVSNSGAPGSG 329
>AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear receptor
NHR-121 protein.
Length = 461
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 300 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 443
+++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 121 protein.
Length = 461
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 300 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 443
+++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein.
Length = 1666
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 592 IPVPRGAGISRTVTEPHLPVTLQGTVCGFRS 500
IP P+G S T P + VTL G + RS
Sbjct: 1340 IPAPKGVASSSNNTSPRVNVTLGGALSSSRS 1370
>AF003135-5|AAK18990.1| 678|Caenorhabditis elegans Hypothetical
protein W03F11.6b protein.
Length = 678
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 592 IPVPRGAGISRTVTEPHLPVTLQGTVCGFRS 500
IP P+G S T P + VTL G + RS
Sbjct: 358 IPAPKGVASSSNNTSPRVNVTLGGALSSSRS 388
>AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical
protein W03F11.6c protein.
Length = 1419
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 592 IPVPRGAGISRTVTEPHLPVTLQGTVCGFRS 500
IP P+G S T P + VTL G + RS
Sbjct: 1338 IPAPKGVASSSNNTSPRVNVTLGGALSSSRS 1368
>AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical
protein W03F11.6a protein.
Length = 1658
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 592 IPVPRGAGISRTVTEPHLPVTLQGTVCGFRS 500
IP P+G S T P + VTL G + RS
Sbjct: 1338 IPAPKGVASSSNNTSPRVNVTLGGALSSSRS 1368
>U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer
amphipath transporters(subfamily iv p-type atpase)
protein 4, isoform a protein.
Length = 1212
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = +1
Query: 412 SKEVATAIRGAIILAKLSVLPVRRGYWGNKIGSHTPSLAKSPASVVL*QSG*FLPLVVLE 591
S++++T +R +I+ ++PVR+ K + P A+SP + L + V+LE
Sbjct: 613 SRKLSTVVRRSILRPISDIIPVRKRLISFKQQAMNPYEAESPDELALIEGAALYDYVLLE 672
>U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer
amphipath transporters(subfamily iv p-type atpase)
protein 4, isoform b protein.
Length = 1454
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = +1
Query: 412 SKEVATAIRGAIILAKLSVLPVRRGYWGNKIGSHTPSLAKSPASVVL*QSG*FLPLVVLE 591
S++++T +R +I+ ++PVR+ K + P A+SP + L + V+LE
Sbjct: 613 SRKLSTVVRRSILRPISDIIPVRKRLISFKQQAMNPYEAESPDELALIEGAALYDYVLLE 672
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,768,310
Number of Sequences: 27780
Number of extensions: 324559
Number of successful extensions: 1022
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -