Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0209.Seq
(640 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 160 6e-40
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 160 8e-40
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 159 1e-39
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 159 1e-39
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 159 1e-39
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 159 1e-39
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 9e-06
At2g33240.1 68415.m04072 myosin, putative similar to myosin (GI:... 29 2.0
At3g01450.1 68416.m00069 expressed protein 29 2.6
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 3.4
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 4.5
At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 6.0
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ... 27 7.9
At3g26610.1 68416.m03322 polygalacturonase, putative / pectinase... 27 7.9
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 160 bits (389), Expect = 6e-40
Identities = 73/88 (82%), Positives = 82/88 (93%), Gaps = 1/88 (1%)
Frame = +1
Query: 256 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 435
+IID +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVATAI
Sbjct: 77 QIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAI 136
Query: 436 RGAIILAKLSVLPVRRGYWGNKIGS-HT 516
RGAIILAKLSV+P+RRGYWGNKIG HT
Sbjct: 137 RGAIILAKLSVVPIRRGYWGNKIGKPHT 164
Score = 85.8 bits (203), Expect = 2e-17
Identities = 36/44 (81%), Positives = 42/44 (95%)
Frame = +3
Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGV 638
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+
Sbjct: 161 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGI 204
Score = 60.5 bits (140), Expect = 9e-10
Identities = 25/35 (71%), Positives = 32/35 (91%)
Frame = +2
Query: 149 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253
++++WVPVTKLGRLV+EGKI K+E IYL SLP+KE
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKE 75
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 160 bits (388), Expect = 8e-40
Identities = 74/88 (84%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +1
Query: 256 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 435
+IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 86 QIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 145
Query: 436 RGAIILAKLSVLPVRRGYWGNKIGS-HT 516
RGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 146 RGAIILAKLSVVPVRRGYWGNKIGKPHT 173
Score = 85.8 bits (203), Expect = 2e-17
Identities = 36/44 (81%), Positives = 42/44 (95%)
Frame = +3
Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGV 638
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+
Sbjct: 170 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGI 213
Score = 52.8 bits (121), Expect = 2e-07
Identities = 22/35 (62%), Positives = 29/35 (82%)
Frame = +2
Query: 149 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253
++++WVPVTKLGRLV G I ++E IYL SLP+KE
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKE 84
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 159 bits (386), Expect = 1e-39
Identities = 74/88 (84%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +1
Query: 256 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 435
+IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 85 QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144
Query: 436 RGAIILAKLSVLPVRRGYWGNKIGS-HT 516
RGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 145 RGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 85.8 bits (203), Expect = 2e-17
Identities = 36/44 (81%), Positives = 42/44 (95%)
Frame = +3
Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGV 638
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGI 212
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = +2
Query: 149 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 159 bits (386), Expect = 1e-39
Identities = 74/88 (84%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +1
Query: 256 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 435
+IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 85 QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144
Query: 436 RGAIILAKLSVLPVRRGYWGNKIGS-HT 516
RGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 145 RGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 85.8 bits (203), Expect = 2e-17
Identities = 36/44 (81%), Positives = 42/44 (95%)
Frame = +3
Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGV 638
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGI 212
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = +2
Query: 149 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 159 bits (386), Expect = 1e-39
Identities = 74/88 (84%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +1
Query: 256 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 435
+IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 85 QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144
Query: 436 RGAIILAKLSVLPVRRGYWGNKIGS-HT 516
RGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 145 RGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 85.8 bits (203), Expect = 2e-17
Identities = 36/44 (81%), Positives = 42/44 (95%)
Frame = +3
Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGV 638
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGI 212
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = +2
Query: 149 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 159 bits (386), Expect = 1e-39
Identities = 74/88 (84%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +1
Query: 256 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 435
+IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 85 QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144
Query: 436 RGAIILAKLSVLPVRRGYWGNKIGS-HT 516
RGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 145 RGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 85.8 bits (203), Expect = 2e-17
Identities = 36/44 (81%), Positives = 42/44 (95%)
Frame = +3
Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGV 638
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGI 212
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = +2
Query: 149 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 47.2 bits (107), Expect = 9e-06
Identities = 19/62 (30%), Positives = 40/62 (64%)
Frame = +1
Query: 292 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 471
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 472 PV 477
V
Sbjct: 209 QV 210
Score = 33.9 bits (74), Expect = 0.092
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +3
Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGV 638
K T P + G G+ V L PA GTG+++ + +L+MAGV
Sbjct: 214 KYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGV 257
>At2g33240.1 68415.m04072 myosin, putative similar to myosin
(GI:433663) [Arabidopsis thaliana]; myosin my5A
(SP:Q02440) {Gallus gallus}
Length = 1770
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Frame = -2
Query: 603 AQTQFQYHEGQESAGLLQNHTCR*LCKGRCVASDLVTPVTSSNW----*NRQLSKDNSAS 436
A+ +FQY +++A ++Q+ R LC+ R + + T W +R+L K A+
Sbjct: 838 ARVEFQYRTKRKAAIIIQSQIRRCLCRRRYLRTKKAAITTQCGWRVKVAHRELRKLKMAA 897
Query: 435 NGSGDFLAALHTQTNMTVVVANGNKCLE 352
+G A +T + V CLE
Sbjct: 898 KETG---ALQDAKTKLEKEVEELTSCLE 922
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = -3
Query: 509 LPILLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPAR 330
L +LL Q L++ + A + VA + H +P + P L P N R+R A
Sbjct: 163 LDLLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIRAKAS 221
Query: 329 VCF 321
CF
Sbjct: 222 TCF 224
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 28.7 bits (61), Expect = 3.4
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -3
Query: 500 LLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 321
LL Q L++ + A R VA + H +P + P L P N R+R A CF
Sbjct: 166 LLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKASACF 224
Query: 320 CTGMIFRTSSFR 285
+G + R + R
Sbjct: 225 -SGCVPRLEAAR 235
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 358 AFVAIGDNNGHIGLGVKCSKE 420
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At2g04050.1 68415.m00386 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +3
Query: 513 HTVPCKVTGKCGSVTVRL 566
H VPCK T K G VTV L
Sbjct: 11 HLVPCKDTWKSGQVTVEL 28
>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
(UBP16) similar to ubiquitin-specific protease 16
GI:11993477 [Arabidopsis thaliana]
Length = 1008
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -2
Query: 510 ASDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAAL 406
++D ++P+ SSN + L K SAS+ +G LA L
Sbjct: 403 STDALSPLDSSNLSHVTLPKSKSASSENGSMLAPL 437
>At3g26610.1 68416.m03322 polygalacturonase, putative / pectinase,
putative similar to polygalacturonase (PG1) GI:5669846,
(PG2) GI:5669848 [Glycine max]; contains PF00295:
Glycosyl hydrolases family 28 (polygalacturonases)
Length = 470
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 629 HLKKLLRNWRRHNSSTTRGRNQPDCYRTTLAGDF 528
H+KK+ RRH+ +T G P Y +T G F
Sbjct: 34 HVKKIKPKHRRHSKNTPTGSPAPAPYPSTNEGVF 67
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,023,411
Number of Sequences: 28952
Number of extensions: 307235
Number of successful extensions: 887
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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