Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0208.Seq
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.51 
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    28   1.6  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.7  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   6.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   6.3  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    25   8.3  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   8.3  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    25   8.3  

>SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 96

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +3

Query: 438 ALCLQMCLESALDYITSARDRTAGSVSKLQSQTFVTTFNTYRFQ--NKILALLTMYSCII 611
           A+C   C +  L YI+++RD  AG    L  +  VT FNT   Q  N++   LT+   I+
Sbjct: 18  AICY-FC-DHLLQYISNSRDSKAGLKIFLVFELAVTIFNTVMLQLANRVKNGLTLAILIV 75

Query: 612 S 614
           S
Sbjct: 76  S 76


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 717 NKCTIYFHDKRMYKIYKYLTINKNYSQTLFPKHFSLLYNYTS 592
           N C + F    +       TI++ Y ++LF K FS  Y+Y S
Sbjct: 4   NGCLLLFAYSLLSFSLTAATIDETYDESLFIKSFSSRYSYVS 45


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/68 (23%), Positives = 35/68 (51%)
 Frame = -1

Query: 609 LYNYTSLVELEFYFEIYMY*MLLQMFEIVTWRRSPLCDREPMLYNLEQTLGTFASTALHA 430
           LYN+  L+  E   E  +  +L  +FE +  +  P+   + M  +L++ + +      H+
Sbjct: 466 LYNHVYLLAFESKNERVINYVLTNIFEDMVSQSPPIPASKLMATSLKKCVQSLPEKYAHS 525

Query: 429 FPALQHRI 406
           FP++++ I
Sbjct: 526 FPSVRNYI 533


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +3

Query: 315 TSSAHAPSASGTTRH*REATLYAASLSSQRRFDAGGRETRE 437
           +SS HAPS  G  +H      Y  S  SQ+ F   GR TR+
Sbjct: 252 SSSGHAPSQQGGNKH-----SYKKS-DSQQSFHHKGRNTRK 286


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 633  LFPKHFSLLYNYTSLVELEFYFEIY 559
            ++  H SLL+++  +VEL+  F IY
Sbjct: 2701 VYQSHVSLLHHFQEIVELQEAFGIY 2725


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 390 LSSQRRFDAGGRETREALCLQMCLE 464
           +SS RRF   G   RE  C + C+E
Sbjct: 465 MSSHRRFPDWGDYQREVTCCRNCVE 489


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -2

Query: 182 GRLHAERSGVSHAGRPGSSPT-GDSSAPGHRPAPSG-PQVVP 63
           G LH  RS    +GRP  SP+    S P   P   G P+  P
Sbjct: 342 GSLHRSRSPSPRSGRPRRSPSPSHLSIPSTLPPADGVPKPTP 383


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 122 WGLTPADLHAIHRSAQHAIDQSRREQQMDNDMQE 223
           W L    +H        AI+QS+ E +MD D+ E
Sbjct: 738 WSLDDLLIHQKKALKSAAIEQSKHEDEMDIDVVE 771


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,681,996
Number of Sequences: 5004
Number of extensions: 51344
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)