Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0208.Seq
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0818 + 32004749-32005347,32005905-32006415,32006539-32007300     31   0.70 
06_03_0789 + 24630552-24631171,24631240-24631279,24632422-246324...    29   3.8  
02_03_0388 + 18429538-18430598,18430971-18431081,18431165-184312...    29   3.8  
02_05_0807 + 31870018-31870953                                         29   5.0  
01_01_1195 - 9567023-9567789,9567871-9568120                           29   5.0  
04_04_0258 + 23988409-23989580,23990450-23990851,23991138-23991204     28   6.6  
10_07_0061 + 12489552-12489674,12490761-12490836,12490916-124909...    28   8.7  
07_03_0944 + 22787933-22789906                                         28   8.7  
02_02_0707 + 13144147-13144788,13145115-13148663                       28   8.7  

>02_05_0818 + 32004749-32005347,32005905-32006415,32006539-32007300
          Length = 623

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +3

Query: 417 GGRETREALCLQMCLESALDYITSARDRTAGSV 515
           GGR       L+  LES L+++T+ARDR A S+
Sbjct: 44  GGRWAPPDQVLENVLESVLEFLTAARDRNAASL 76


>06_03_0789 +
           24630552-24631171,24631240-24631279,24632422-24632486,
           24632615-24632660,24633222-24633314,24633736-24633855,
           24633931-24633982,24634051-24634123,24634350-24634416,
           24634670-24634720,24635026-24635118,24635207-24635308
          Length = 473

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 71  PEGQKVQDGAPVQMSLPWGLTP 136
           P G+ +  G P Q+  PWG+TP
Sbjct: 416 PAGRLIVTGEPEQLDNPWGVTP 437


>02_03_0388 +
           18429538-18430598,18430971-18431081,18431165-18431237,
           18431513-18431695
          Length = 475

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -2

Query: 188 VTGRLHAERSGVSHAGRPGSSPTGDSSAPGHRPAPSGPQ 72
           + GR  A R+    A  P S P   + +P H PAPS PQ
Sbjct: 65  IPGRQAASRAPSPPA--PPSPPQASAPSPPHAPAPSPPQ 101


>02_05_0807 + 31870018-31870953
          Length = 311

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -2

Query: 194 HGVTGRLHAERSGVSHAGRPGSSPTGDSSAPGHRPAPSGPQVVP 63
           HG + R  A R      G P +   G  + P H+P   GPQ  P
Sbjct: 168 HGASPRSRAGRFAYVWVGNPATQCPGQCAWPYHQPV-YGPQAAP 210


>01_01_1195 - 9567023-9567789,9567871-9568120
          Length = 338

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -2

Query: 194 HGVTGRLHAERSGVSHAGRPGSSPTGDSSAPGHRPAP 84
           H +  R H E+SG     +P SS    + AP   P P
Sbjct: 143 HVLMARRHREQSGAFRRRKPSSSSASPAPAPAPPPPP 179


>04_04_0258 + 23988409-23989580,23990450-23990851,23991138-23991204
          Length = 546

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 170 AERSGVSHAGRPGSSPTGDSSAPGHRPAP-SGPQVVPF 60
           + R   +H+ RPG SP    SA G   AP S P+V PF
Sbjct: 324 SSRPNSAHSSRPG-SPGSQVSAVGSEGAPRSRPKVNPF 360


>10_07_0061 + 12489552-12489674,12490761-12490836,12490916-12490980,
            12491089-12491166,12492156-12492236,12492813-12492974,
            12493328-12493426,12493509-12494797,12495063-12495286,
            12495373-12495500,12495596-12495634,12495724-12497178
          Length = 1272

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +2

Query: 2    QNEQQTIVHQFVPQTAPTQEMEQPEGQKVQDGAPVQMSLPWGLTPADLHAIHRSAQH 172
            Q +QQ I  Q   Q    Q+ +Q + Q+ Q G+P+Q +   G +PA        +QH
Sbjct: 1145 QQQQQQIQQQQQQQQQQQQQQQQIQQQQQQMGSPLQQAAQVG-SPAGSQQSLVMSQH 1200


>07_03_0944 + 22787933-22789906
          Length = 657

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 20/55 (36%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
 Frame = -2

Query: 242 CSR*FSLPACRCPFVVHGVTGRLHAERSGVSHA------GRPGSSPTGDSSAPGH 96
           CSR +S     CPFV  G   R    R     A       RPG  P+GDS    H
Sbjct: 245 CSRAYSHDWTECPFVHPGENARRRDPRKHPYTAVPCPNFRRPGGCPSGDSCEFSH 299


>02_02_0707 + 13144147-13144788,13145115-13148663
          Length = 1396

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 394 LSEAAYNVASRQCRVVPEAEGACAELVGSR 305
           LSE  Y++   + R +PE    C+E+  SR
Sbjct: 682 LSELYYSICRNEIRTIPEQGAGCSEMSFSR 711


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,355,342
Number of Sequences: 37544
Number of extensions: 384821
Number of successful extensions: 1393
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1391
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)