Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0208.Seq
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)                       30   2.2  
SB_58196| Best HMM Match : 7tm_1 (HMM E-Value=6.7e-10)                 29   2.9  
SB_40529| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_23091| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_10333| Best HMM Match : ATP1G1_PLM_MAT8 (HMM E-Value=0.73)          29   5.1  
SB_57101| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)                  28   6.7  
SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)                   28   6.7  
SB_3674| Best HMM Match : Retrotrans_gag (HMM E-Value=1.7e-06)         28   8.9  
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 2639

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -2

Query: 200 VVHGVTGRLHAERSGVSHAGRPGSSPTGDSSAPGHRPA 87
           V++GVTG L       S +      PT D S P HRPA
Sbjct: 53  VINGVTGALAKTIPSSSPSKIAAYEPTPDPSRPPHRPA 90


>SB_58196| Best HMM Match : 7tm_1 (HMM E-Value=6.7e-10)
          Length = 334

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -3

Query: 472 RADSRHICKHSASRVSRPPASNRRCELSEAAYNVASRQ 359
           RA  R +CK++ +R  +P A N  C++S  A  + +RQ
Sbjct: 295 RAFKRLVCKYARNRSVQPIALNVVCDVSLPAITLGTRQ 332


>SB_40529| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1437

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -2

Query: 200 VVHGVTGRLHAERSGVSHAGRPGSSPTGDSSAPGHRPA 87
           V++GVTG L       + +      PT D S P HRPA
Sbjct: 354 VINGVTGALAKTIPSSNPSKIAAYEPTPDPSRPPHRPA 391


>SB_23091| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 198

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 200 VVHGVTGRLHAERSGVSHAGRPGSSPTGDSSAPGHRP 90
           V++GVTG L       + +      PT D+S P HRP
Sbjct: 148 VINGVTGALAKTIPSSNPSKIAAYEPTPDTSRPSHRP 184


>SB_10333| Best HMM Match : ATP1G1_PLM_MAT8 (HMM E-Value=0.73)
          Length = 150

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 35  VPQTAPTQEMEQPEGQKVQDGAPVQMS 115
           VP T     +E P+G +  DG PVQ S
Sbjct: 63  VPSTPDKGTVESPKGNRTYDGVPVQES 89


>SB_57101| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 855

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 200 VVHGVTGRLHAERSGVSHAGRPGSSPTGDSSAPGHRP 90
           V++GVTG L       S +      PT D S P HRP
Sbjct: 134 VINGVTGALAKTIPSSSPSKIAAYEPTPDPSRPPHRP 170


>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
          Length = 1080

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = -2

Query: 191  GVTGRLHAERSGVSHA---GRPGSSPTGDSSAPGHRPAPSGP 75
            G T  +++   G S +   G  G    GD S+P HR +PS P
Sbjct: 935  GTTSGVYSMGGGPSDSDDNGDRGDDGDGDGSSPSHRSSPSTP 976


>SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 2675

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 147 CRSAGVKPHGRLICTGAPSCTFWPSG 70
           C   G KP G  +CT    C  W +G
Sbjct: 323 CTGVGAKPSGTRLCTLTRYCPVWATG 348


>SB_3674| Best HMM Match : Retrotrans_gag (HMM E-Value=1.7e-06)
          Length = 882

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 200 VVHGVTGRLHAERSGVSHAGRPGSSPTGDSSAPGHRP 90
           V++GVTG L       + +      PT D S P HRP
Sbjct: 252 VINGVTGALAKTIPSSNPSKIAAYEPTPDPSRPSHRP 288


>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2174

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -2

Query: 131  SSPTGDSSAPGHRPAPSGPQ 72
            S PT     PGHRP P G Q
Sbjct: 1366 SRPTAPLPTPGHRPEPHGAQ 1385


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,973,936
Number of Sequences: 59808
Number of extensions: 424459
Number of successful extensions: 1388
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1385
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)