Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0208.Seq
(726 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81595-8|CAB54305.1| 345|Caenorhabditis elegans Hypothetical pr... 34 0.090
Z81595-7|CAB54304.1| 358|Caenorhabditis elegans Hypothetical pr... 34 0.090
U61952-7|AAB03164.1| 1042|Caenorhabditis elegans Abnormal cell l... 32 0.48
U21308-11|AAB93312.3| 265|Caenorhabditis elegans Roller: helica... 32 0.48
U21308-10|AAN65281.1| 329|Caenorhabditis elegans Roller: helica... 32 0.48
M25477-1|AAA27991.1| 329|Caenorhabditis elegans collagen protein. 32 0.48
AF163018-1|AAD49323.1| 1042|Caenorhabditis elegans bromodomain p... 32 0.48
AF040655-8|AAB95047.1| 632|Caenorhabditis elegans Hypothetical ... 31 1.1
Z81079-3|CAB03083.2| 588|Caenorhabditis elegans Hypothetical pr... 30 1.5
U40800-6|AAA81492.1| 171|Caenorhabditis elegans Hypothetical pr... 30 1.5
U23411-1|AAC46730.2| 231|Caenorhabditis elegans Hypothetical pr... 30 1.5
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 30 1.9
U49956-7|AAL32232.1| 753|Caenorhabditis elegans Hypothetical pr... 29 4.5
U49956-6|ABD94087.1| 762|Caenorhabditis elegans Hypothetical pr... 29 4.5
U49956-5|ABD94086.1| 762|Caenorhabditis elegans Hypothetical pr... 29 4.5
U12966-7|AAK84534.1| 352|Caenorhabditis elegans Dumpy : shorter... 29 4.5
L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related p... 29 4.5
AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical... 28 5.9
AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical ... 28 5.9
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 28 7.8
Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical pr... 28 7.8
>Z81595-8|CAB54305.1| 345|Caenorhabditis elegans Hypothetical
protein T22H2.6b protein.
Length = 345
Score = 34.3 bits (75), Expect = 0.090
Identities = 20/43 (46%), Positives = 24/43 (55%)
Frame = +1
Query: 64 GTT*GPEGAGRCPGADESPVGLDPGRPACDTPLRSACNRPVTP 192
GTT P+GA RC GADE V + +PA T R+ N V P
Sbjct: 139 GTTCDPQGA-RCIGADEKHVPMKKKKPARKTVERNQFNEVVCP 180
>Z81595-7|CAB54304.1| 358|Caenorhabditis elegans Hypothetical
protein T22H2.6a protein.
Length = 358
Score = 34.3 bits (75), Expect = 0.090
Identities = 20/43 (46%), Positives = 24/43 (55%)
Frame = +1
Query: 64 GTT*GPEGAGRCPGADESPVGLDPGRPACDTPLRSACNRPVTP 192
GTT P+GA RC GADE V + +PA T R+ N V P
Sbjct: 139 GTTCDPQGA-RCIGADEKHVPMKKKKPARKTVERNQFNEVVCP 180
>U61952-7|AAB03164.1| 1042|Caenorhabditis elegans Abnormal cell
lineage protein 49 protein.
Length = 1042
Score = 31.9 bits (69), Expect = 0.48
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 162 ERCIACRSAGVKPHGRLICTGAPSCT 85
E C+ CR G+ P GR+ C PS T
Sbjct: 234 EGCLECRRCGISPAGRVNCVLCPSTT 259
>U21308-11|AAB93312.3| 265|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 8, isoform b
protein.
Length = 265
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -2
Query: 158 GVSHAGRPGSSPTGDSSAPGH--RPAPSGPQVVP 63
G S+ G PG P GDS PGH R P+GP P
Sbjct: 213 GQSYQGPPG--PPGDSGTPGHEGRAGPNGPAGPP 244
>U21308-10|AAN65281.1| 329|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 8, isoform a
protein.
Length = 329
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -2
Query: 158 GVSHAGRPGSSPTGDSSAPGH--RPAPSGPQVVP 63
G S+ G PG P GDS PGH R P+GP P
Sbjct: 277 GQSYQGPPG--PPGDSGTPGHEGRAGPNGPAGPP 308
>M25477-1|AAA27991.1| 329|Caenorhabditis elegans collagen protein.
Length = 329
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -2
Query: 158 GVSHAGRPGSSPTGDSSAPGH--RPAPSGPQVVP 63
G S+ G PG P GDS PGH R P+GP P
Sbjct: 277 GQSYQGPPG--PPGDSGTPGHEGRAGPNGPAGPP 308
>AF163018-1|AAD49323.1| 1042|Caenorhabditis elegans bromodomain
protein LIN-49 protein.
Length = 1042
Score = 31.9 bits (69), Expect = 0.48
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 162 ERCIACRSAGVKPHGRLICTGAPSCT 85
E C+ CR G+ P GR+ C PS T
Sbjct: 234 EGCLECRRCGISPAGRVNCVLCPSTT 259
>AF040655-8|AAB95047.1| 632|Caenorhabditis elegans Hypothetical
protein T24E12.10 protein.
Length = 632
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 322 QRTLLLPQEQHDIDERPHYMQPRSVRSVDSML 417
Q T P+ Q+DIDE H++ +SV V + L
Sbjct: 548 QETSQSPENQYDIDEEAHHLSTQSVAPVKAFL 579
>Z81079-3|CAB03083.2| 588|Caenorhabditis elegans Hypothetical
protein F39H11.3 protein.
Length = 588
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Frame = +2
Query: 2 QNEQQTIVHQFVPQTAPTQEMEQPEGQKVQDGAPVQMSLPWGLTPAD--LHAIHRSAQHA 175
Q++QQ + Q PQ Q M QP+ + Q G P G+ D H + + QH
Sbjct: 386 QHQQQQVQMQQQPQMGQQQMMGQPQMVQPQMGQPPMGGAHPGVVAPDGHPHQMMQQQQHP 445
Query: 176 IDQSRREQQMDNDMQ 220
+ Q M + MQ
Sbjct: 446 QQHHMQYQGMHDPMQ 460
>U40800-6|AAA81492.1| 171|Caenorhabditis elegans Hypothetical
protein D2096.6 protein.
Length = 171
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 91 GRCPGADESPVGLDPGRPACDTPLRSAC 174
G+CPG P+ DP RP P +S C
Sbjct: 50 GQCPGGPSLPIECDPKRPWPQCPPQSYC 77
>U23411-1|AAC46730.2| 231|Caenorhabditis elegans Hypothetical
protein T25E4.1 protein.
Length = 231
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 91 GRCPGADESPVGLDPGRPACDTPLRSAC 174
G+CPG P+ DP RP P +S C
Sbjct: 109 GQCPGGPSLPIECDPKRPWPQCPPQSYC 136
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -2
Query: 143 GRPGSSPTGDSSAPGHRPAPSGPQVVP 63
GRPG + G SS PG P P+GP P
Sbjct: 242 GRPGKNAQGGSSRPG-PPGPAGPPGPP 267
>U49956-7|AAL32232.1| 753|Caenorhabditis elegans Hypothetical
protein M03A1.6b protein.
Length = 753
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Frame = -2
Query: 161 SGVSHAGRPGSS---PTGDSSAPGHRPAPSGPQVVP 63
SG+ G PGSS P S P P PSG V P
Sbjct: 13 SGLPSNGNPGSSTTVPPASKSGPVAPPRPSGTPVAP 48
>U49956-6|ABD94087.1| 762|Caenorhabditis elegans Hypothetical
protein M03A1.6d protein.
Length = 762
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Frame = -2
Query: 161 SGVSHAGRPGSS---PTGDSSAPGHRPAPSGPQVVP 63
SG+ G PGSS P S P P PSG V P
Sbjct: 22 SGLPSNGNPGSSTTVPPASKSGPVAPPRPSGTPVAP 57
>U49956-5|ABD94086.1| 762|Caenorhabditis elegans Hypothetical
protein M03A1.6c protein.
Length = 762
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Frame = -2
Query: 161 SGVSHAGRPGSS---PTGDSSAPGHRPAPSGPQVVP 63
SG+ G PGSS P S P P PSG V P
Sbjct: 22 SGLPSNGNPGSSTTVPPASKSGPVAPPRPSGTPVAP 57
>U12966-7|AAK84534.1| 352|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 17 protein.
Length = 352
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = -2
Query: 182 GRLHAERSGVSHAGRPGSSPTGDSSAPG-HRPAPSGPQ 72
GR+ + G G GS P+G S G H P GPQ
Sbjct: 60 GRVRRQAGGYGGYGGYGSGPSGPSGPSGPHGGFPGGPQ 97
>L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related
protein 1 protein.
Length = 1845
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = -2
Query: 206 PFVVHGVTGRLHAERSGV-SHAGRPGSSPTG----DSSAPGHRPAP 84
PFV+H T RL + R+G+ + +G P+G D P + P P
Sbjct: 1090 PFVMHDYTARLTSNRNGIGAWSGSESIVPSGWGDWDGPEPDNSPMP 1135
>AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical
protein Y51H4A.9 protein.
Length = 351
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -2
Query: 173 HAERSGVSHAGRPGSSPTGDSSAPGHRPAPSGPQVVP 63
H ++G S G PG P GD+ APG AP G Q P
Sbjct: 294 HPGQAGSSLPGAPG--PQGDAGAPGQPGAP-GQQGEP 327
>AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical
protein Y37H9A.3 protein.
Length = 792
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -2
Query: 155 VSHAGRPGSSPTGDSSAPGHRPAPSGPQVVPFLE*ELSAARI 30
+ RP + G A RPAP+ P VP L+ L AA +
Sbjct: 32 MGRVSRPAAPARGAPPAARGRPAPAAPANVPGLDPRLLAAAL 73
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 11 QQTIVHQFVPQTAPTQEMEQPEGQKV-QDGAPVQMSLP 121
QQ +V V Q AP + +Q + Q V Q PVQ + P
Sbjct: 194 QQPVVQAPVAQQAPPSQPQQAQAQPVVQQAPPVQQASP 231
>Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical
protein F14F7.1 protein.
Length = 305
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/33 (48%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Frame = -2
Query: 170 AERSGVSHAGRPGSSPTGDSSAPGH--RPAPSG 78
A G S GRPG P G APG RP P G
Sbjct: 235 AGHPGSSGGGRPG--PAGPKGAPGQPGRPGPDG 265
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,369,771
Number of Sequences: 27780
Number of extensions: 324329
Number of successful extensions: 1342
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1334
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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