Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0208.Seq
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    25   0.96 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   6.8  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   9.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.0  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   9.0  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   9.0  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +1

Query: 79  PEGAGRCPGADESPVGLDPGRPACDTPLRSACNRPVTP*TTNGQRHAGSENYRE 240
           P G+   PGA  +   L   R   +  L +A +   T  + N  R AGS +  E
Sbjct: 151 PTGSSCGPGAAAAAALLSKRRSVSECSLGTASSTSSTASSRNSDRSAGSPSVSE 204


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 140  RPGSSPTGDSSAPGHRPAPSGPQVVPFLE 54
            +P   P    ++PG  P P+G ++  F+E
Sbjct: 1123 KPQLKPQKPFTSPGGIPGPNGIKMPSFME 1151


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = -2

Query: 143 GRPGSSPTGDSSAPGHRPAPSGPQVVPFL 57
           G   +SP+      GH P P+G    P +
Sbjct: 109 GYRSASPSPGMGHMGHTPTPNGHPSTPIV 137


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 51  GAVCGTNWWTIVCCSFW 1
           G + G    T+VC +FW
Sbjct: 380 GYLLGIQCLTVVCLAFW 396


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +3

Query: 468 ALDYITSARDRTAGSVSKLQSQTFVTTFNTYRFQNKILALLTMYSCI 608
           AL +      R+AGS+  + S +   TF T +        L + SC+
Sbjct: 57  ALRFRYECEGRSAGSIPGVNSTSENKTFPTIKIVGYKGRALVVVSCV 103


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +3

Query: 468 ALDYITSARDRTAGSVSKLQSQTFVTTFNTYRFQNKILALLTMYSCI 608
           AL +      R+AGS+  + S +   TF T +        L + SC+
Sbjct: 57  ALRFRYECEGRSAGSIPGVNSTSENKTFPTIKIVGYKGRALVVVSCV 103


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 99  APSCTFWPSGCSI 61
           A +C FWP+G  I
Sbjct: 197 ANACRFWPTGRGI 209


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,935
Number of Sequences: 438
Number of extensions: 4008
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)