Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0208.Seq
         (726 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50770.1 68414.m05710 hypothetical protein                          32   0.45 
At5g21160.1 68418.m02528 La domain-containing protein / proline-...    30   1.4  
At1g20910.1 68414.m02618 ARID/BRIGHT DNA-binding domain-containi...    29   2.4  
At1g20900.1 68414.m02617 DNA-binding protein-related contains Pf...    29   2.4  
At1g76510.2 68414.m08903 ARID/BRIGHT DNA-binding domain-containi...    29   3.1  
At1g76510.1 68414.m08902 ARID/BRIGHT DNA-binding domain-containi...    29   3.1  
At4g10190.1 68417.m01670 F-box family protein-related contains T...    28   7.2  
At2g20300.1 68415.m02371 protein kinase family protein contains ...    28   7.2  
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro...    27   9.6  
At4g00900.1 68417.m00122 calcium-transporting ATPase 2, endoplas...    27   9.6  
At1g09850.1 68414.m01109 cysteine protease, papain-like (XBCP3) ...    27   9.6  

>At1g50770.1 68414.m05710 hypothetical protein
          Length = 632

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 15/51 (29%), Positives = 31/51 (60%)
 Frame = +3

Query: 423 RETREALCLQMCLESALDYITSARDRTAGSVSKLQSQTFVTTFNTYRFQNK 575
           R +++   L+ C  +++D   + ++R+A S  +L+  +F  +FN +RF NK
Sbjct: 11  RSSKKPHLLKPCNNTSIDGSETPQNRSAPSPPELKFLSFSVSFNGWRFPNK 61


>At5g21160.1 68418.m02528 La domain-containing protein /
           proline-rich family protein contains proline-rich
           extensin domains, INTERPRO:IPR002965, PF05383: La domain
          Length = 826

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -2

Query: 206 PFVVHGVTGRLHAERSGVSHAGRPGSSPTGDSSAPGHRPAPSGPQVVPFL 57
           P     VTG+  ++  G ++ G    +P+G  S PG R   +GP   P+L
Sbjct: 80  PIPTPAVTGQAKSKGGGKANPGH--KNPSGRHSKPGPRSNQNGPPPPPYL 127


>At1g20910.1 68414.m02618 ARID/BRIGHT DNA-binding domain-containing
           protein low similarity to Chain A, Human Mrf-2 Domain
           [Homo sapiens] GI:14278238; contains Pfam profile
           PF01388: ARID/BRIGHT DNA binding domain
          Length = 398

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 71  PEGQKVQDGAPVQMSLPWGLTP 136
           P G+ V  G P Q+  PWG+TP
Sbjct: 343 PAGKVVITGQPEQLDNPWGITP 364


>At1g20900.1 68414.m02617 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 311

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = -2

Query: 143 GRPGSSPTGDSSAPGHRPAPSGP 75
           GRP S P   SSAPG RP    P
Sbjct: 71  GRPDSDPNTSSSAPGKRPRGRPP 93


>At1g76510.2 68414.m08903 ARID/BRIGHT DNA-binding domain-containing
           protein contains Pfam profile PF01388: ARID/BRIGHT DNA
           binding domain
          Length = 434

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 71  PEGQKVQDGAPVQMSLPWGLTP 136
           P G+ V  G P Q+  PWG+TP
Sbjct: 379 PAGRLVIAGQPEQLDNPWGITP 400


>At1g76510.1 68414.m08902 ARID/BRIGHT DNA-binding domain-containing
           protein contains Pfam profile PF01388: ARID/BRIGHT DNA
           binding domain
          Length = 434

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 71  PEGQKVQDGAPVQMSLPWGLTP 136
           P G+ V  G P Q+  PWG+TP
Sbjct: 379 PAGRLVIAGQPEQLDNPWGITP 400


>At4g10190.1 68417.m01670 F-box family protein-related contains
           TIGRFAM TIGR01640: F-box protein interaction domain
          Length = 353

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 128 LTPADLHAIHRSAQHAIDQSRREQQMDNDMQEV 226
           L   DLH IH +  + I Q R +  + N ++EV
Sbjct: 55  LVSVDLHTIHNNKVNIISQLRLKDPLSNFLEEV 87


>At2g20300.1 68415.m02371 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 744

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -2

Query: 167 ERSGVSHAGRPGSSPTGD--SSAPGHRPAP 84
           E + +S+ G P SSP GD    APG  P P
Sbjct: 212 EVTHISYPGIPSSSPNGDVTGDAPGGLPIP 241


>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
           protein similar to PIR|JC7196 phytocyanin-related
           protein Pn14 {Ipomoea nil}; contains Pfam profile
           PF02298: Plastocyanin-like domain
          Length = 349

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
 Frame = -2

Query: 149 HAGRPGSSPTGDSSAPG--HRPAPSGP 75
           HA  PGSS  G  + PG  H P  S P
Sbjct: 141 HAAAPGSSTPGSMTPPGGAHSPKSSSP 167


>At4g00900.1 68417.m00122 calcium-transporting ATPase 2, endoplasmic
           reticulum-type (ECA2) nearly identical to SP|O23087
           Calcium-transporting ATPase 2, endoplasmic
           reticulum-type (EC 3.6.3.8) {Arabidopsis thaliana};
           contains InterPro Accession IPR006069: Cation
           transporting ATPase
          Length = 1054

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -1

Query: 198 CSRRDWSIAC*AERCIACRSAGVKPHGRLI-CTGAPS 91
           C+  D ++   AE C  C  AGV   G+L   TG P+
Sbjct: 415 CNNMDANLQAVAEICSICNDAGVFYEGKLFRATGLPT 451


>At1g09850.1 68414.m01109 cysteine protease, papain-like (XBCP3)
           identical to papain-like cysteine peptidase XBCP3
           GI:14600257 from [Arabidopsis thaliana]; contains Pfam
           profiles PF00112: Papain family cysteine protease and
           PF00396: Granulin
          Length = 437

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
 Frame = -1

Query: 231 VFTSCMSLSICCSRRDWSIAC*AERCIACRSAGVKPHGRLICT-GAPSCTFWPSGC 67
           +FT C S   CC  R+    C + +C    SA     GR  C    P C    S C
Sbjct: 352 LFTYCSSGETCCCARELFGLCFSWKCCEIESAVCCKDGRHCCPHDYPVCDTTRSLC 407


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,199,160
Number of Sequences: 28952
Number of extensions: 278378
Number of successful extensions: 883
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)