Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0202.Seq
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    29   0.65 
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    28   1.1  
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    27   3.5  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    26   4.6  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    26   6.0  
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    25   8.0  

>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -3

Query: 195 YFVGFQN-SEVMINRDNWGHSYCDVRGEIL 109
           Y VG+ N + ++++   WGHS+ +V  E+L
Sbjct: 142 YIVGYPNEARLLMDNFKWGHSFFEVNEELL 171


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/55 (30%), Positives = 31/55 (56%)
 Frame = -3

Query: 192 FVGFQNSEVMINRDNWGHSYCDVRGEILGSSQDEHQRKHRQRCFHQSRTKVRGSK 28
           FV   + ++ ++++N GH   D+   +  SS+DE  RKH +    +S+ + R SK
Sbjct: 74  FVPTSSVQLNVSKNN-GHKASDIVDAV--SSKDEELRKHAKGEGKRSKNRKRSSK 125


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/57 (24%), Positives = 25/57 (43%)
 Frame = +1

Query: 118 TSNVAIRMPPVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSPFEHSNLFKVKL 288
           T    +++   +P   + G+      +P    I  C KY S+ +S   HS L  ++L
Sbjct: 208 TRKFLVKLAKALPDAKFFGIFDW---DPHGLCIYSCFKYGSNAYSHEPHSQLRNLQL 261


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +1

Query: 556 LIPITRPRKSPVSLFFVTTSPCREWVICAPAAFL 657
           +IPI +  KS +SL F+T SPC  + IC+  A L
Sbjct: 45  IIPIAQ--KSNISLPFLTLSPC-SFTICSLRARL 75


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 296 TSTLTLEHRDRILILNRRFLERRLTDDMLRKRVSITADACTDSAAH 433
           TS   +E  DR+  L R F+E +  +     ++S  A  C D+A H
Sbjct: 529 TSDEKIEDLDRMYSLYRFFVEMKEINGEFADKLSRVALDCIDAAEH 574


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +1

Query: 187 NKIEPRSYSIIPCTKYSSSIFSPFEH 264
           N ++P+S +++P T +  SI SP ++
Sbjct: 29  NPVKPQSSNVVPGTSHIGSIKSPADY 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,736,076
Number of Sequences: 5004
Number of extensions: 53933
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)