Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0202.Seq
         (704 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)              63   2e-10
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)               59   3e-09
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)               57   2e-08
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   2e-08
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   8e-07
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)               51   8e-07
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)               51   8e-07
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   7e-06
SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   4e-05
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   4e-05
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   2e-04
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)               37   0.014
SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.098
SB_595| Best HMM Match : CH (HMM E-Value=0)                            31   0.91 
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 32/39 (82%), Positives = 32/39 (82%)
 Frame = -1

Query: 119 VKFLDRRKTNISESIAKGVFINQERKLEVRRRLDTALVL 3
           VKFLD RKTN  ESIAK VFINQERKLE RRR DT LVL
Sbjct: 2   VKFLDLRKTNYCESIAKNVFINQERKLEDRRRSDTVLVL 40


>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 30/39 (76%), Positives = 31/39 (79%)
 Frame = -1

Query: 119 VKFLDRRKTNISESIAKGVFINQERKLEVRRRLDTALVL 3
           VKFLD RKTN  ESI + VFINQERKLE RRR DT LVL
Sbjct: 2   VKFLDLRKTNYCESICQDVFINQERKLEDRRRSDTVLVL 40


>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 29/39 (74%), Positives = 30/39 (76%)
 Frame = -1

Query: 119 VKFLDRRKTNISESIAKGVFINQERKLEVRRRLDTALVL 3
           VKFLD RKTN  ESI +  FINQERKLE RRR DT LVL
Sbjct: 2   VKFLDLRKTNYCESICQECFINQERKLEDRRRSDTVLVL 40


>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 29/39 (74%), Positives = 30/39 (76%)
 Frame = -1

Query: 119 VKFLDRRKTNISESIAKGVFINQERKLEVRRRLDTALVL 3
           VKFLD RKTN  ESI +  FINQERKLE RRR DT LVL
Sbjct: 2   VKFLDLRKTNYCESICQECFINQERKLEDRRRSDTVLVL 40


>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 25/39 (64%), Positives = 29/39 (74%)
 Frame = -1

Query: 119 VKFLDRRKTNISESIAKGVFINQERKLEVRRRLDTALVL 3
           VKFLD  +   +++ AK VFINQERKLE RRR DT LVL
Sbjct: 2   VKFLDYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40


>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 25/39 (64%), Positives = 29/39 (74%)
 Frame = -1

Query: 119 VKFLDRRKTNISESIAKGVFINQERKLEVRRRLDTALVL 3
           VKFLD  +   +++ AK VFINQERKLE RRR DT LVL
Sbjct: 2   VKFLDYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40


>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 25/39 (64%), Positives = 29/39 (74%)
 Frame = -1

Query: 119 VKFLDRRKTNISESIAKGVFINQERKLEVRRRLDTALVL 3
           VKFLD  +   +++ AK VFINQERKLE RRR DT LVL
Sbjct: 2   VKFLDYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40


>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 25/38 (65%), Positives = 27/38 (71%)
 Frame = -1

Query: 116 KFLDRRKTNISESIAKGVFINQERKLEVRRRLDTALVL 3
           + L  RKTN  ESI +  FINQERKLE RRR DT LVL
Sbjct: 3   EILGFRKTNYCESICQECFINQERKLEDRRRSDTVLVL 40


>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 23/40 (57%), Positives = 30/40 (75%)
 Frame = -1

Query: 122 EVKFLDRRKTNISESIAKGVFINQERKLEVRRRLDTALVL 3
           E+ ++  R+T  +++ AK VFINQERKLE RRR DT LVL
Sbjct: 2   EISWIYERRTT-AKAFAKNVFINQERKLEDRRRSDTVLVL 40


>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 22/35 (62%), Positives = 26/35 (74%)
 Frame = -1

Query: 107 DRRKTNISESIAKGVFINQERKLEVRRRLDTALVL 3
           +RR    +++ AK VFINQERKLE RRR DT LVL
Sbjct: 25  ERRARTTAKAFAKNVFINQERKLEDRRRSDTVLVL 59


>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 23/35 (65%), Positives = 27/35 (77%)
 Frame = -1

Query: 107 DRRKTNISESIAKGVFINQERKLEVRRRLDTALVL 3
           +RR T  +++ AK VFINQERKLE RRR DT LVL
Sbjct: 10  ERRTT--AKAFAKNVFINQERKLEDRRRSDTVLVL 42


>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 17/24 (70%), Positives = 20/24 (83%)
 Frame = -1

Query: 86 SESIAKGVFINQERKLEVRRRLDT 15
          +++ AK VFINQERKLE RRR DT
Sbjct: 5  AKAFAKNVFINQERKLEDRRRSDT 28


>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 34.3 bits (75), Expect = 0.098
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = +2

Query: 659 DVVAVSQAPSPESNP 703
           DVVAVSQAPSPESNP
Sbjct: 105 DVVAVSQAPSPESNP 119


>SB_595| Best HMM Match : CH (HMM E-Value=0)
          Length = 905

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
 Frame = -2

Query: 700 VRFRRGSLRNGYHIQGRQQA--RKLPTPGT 617
           VR  RG++++GY+   +QQA  RK+P PG+
Sbjct: 329 VRSNRGTIQSGYYFCKQQQAARRKIPKPGS 358


>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +3

Query: 669 PFLRLPLRNRTL 704
           PFLRLPLRNRTL
Sbjct: 224 PFLRLPLRNRTL 235


>SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +3

Query: 519 PSN--CSSLKYLKCTHSDYEAS*ESRIVIFRHYL-PVPGVGNLRA 644
           PSN  CS L YL+C          +R+++F H L     +G  RA
Sbjct: 523 PSNLRCSILSYLRCNKPPVTIRWRTRLIVFTHLLVSYRSIGGQRA 567


>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +2

Query: 668 AVSQAPSPESNP 703
           AVSQAPSPESNP
Sbjct: 52  AVSQAPSPESNP 63


>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1024

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +1

Query: 181 KTNKIEPRSYSIIPCTKYSSSIFSPFEHSNLFKVKLSAHL 300
           K + ++   Y+ +    +S   F  FEH+N  ++KL+ ++
Sbjct: 725 KNHSVDKHDYNNVTPLLFSQERFERFEHNNSLEIKLTVNI 764


>SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2496

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 470  SIRYWSWNYRGCWTRLALQLFLVKIFKVYS 559
            S+R W + +R C + LA QLF V +  + S
Sbjct: 1135 SLRLWGYKWRKCDSTLAKQLFSVLVQAILS 1164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,947,594
Number of Sequences: 59808
Number of extensions: 421321
Number of successful extensions: 953
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)