Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0202.Seq
         (704 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ138932-1|ABA86538.1| 1387|Drosophila melanogaster CG12105 prot...    29   4.7  
AE014297-3736|AAF56416.3|  993|Drosophila melanogaster CG13654-P...    29   8.1  

>DQ138932-1|ABA86538.1| 1387|Drosophila melanogaster CG12105
           protein.
          Length = 1387

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -3

Query: 156 RDNWGHSYCDVRGEILGSSQDEHQRKHRQRCFHQSRTKVRGSKAIRY 16
           RD    S C  R + + ++  +H  +HRQ+  HQ++   R +   +Y
Sbjct: 252 RDREQQSICLAREQTIDANGQQHHHRHRQQQQHQNQNLNRNTNHQQY 298


>AE014297-3736|AAF56416.3|  993|Drosophila melanogaster CG13654-PA
           protein.
          Length = 993

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -3

Query: 642 RAN-YPLPARGGSDEK*RYGTLTRPRNRNEYTLNI-LTRNNWRASLV 508
           RAN YPL   GG+D    +GT+ RP    E ++   +  N+W  +L+
Sbjct: 352 RANGYPL---GGTDHNHGHGTIIRPNQTTEISIQFGVQPNSWHYALL 395


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,407,091
Number of Sequences: 53049
Number of extensions: 627128
Number of successful extensions: 1572
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1572
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3108380451
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)