Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0202.Seq
         (704 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023822-1|CAD21649.1|  672|Caenorhabditis elegans Hypothetical ...    28   7.5  
AL021572-3|CAA16517.2|  672|Caenorhabditis elegans Hypothetical ...    28   7.5  
Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>AL023822-1|CAD21649.1|  672|Caenorhabditis elegans Hypothetical
           protein W06H3.3 protein.
          Length = 672

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 157 INHYLGVL-KTNKIEPRSYSIIPCTKYSSSIFSPFEHSNLFKVKLSAHLD 303
           I+  LGVL K N  +  +  I P     +  FSP+EH  +F +     +D
Sbjct: 25  ISSSLGVLLKNNGYKVSAIKIDPYLNEDAGTFSPYEHGEVFVLDDGGEVD 74


>AL021572-3|CAA16517.2|  672|Caenorhabditis elegans Hypothetical
           protein W06H3.3 protein.
          Length = 672

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 157 INHYLGVL-KTNKIEPRSYSIIPCTKYSSSIFSPFEHSNLFKVKLSAHLD 303
           I+  LGVL K N  +  +  I P     +  FSP+EH  +F +     +D
Sbjct: 25  ISSSLGVLLKNNGYKVSAIKIDPYLNEDAGTFSPYEHGEVFVLDDGGEVD 74


>Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical
           protein T07D10.2 protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 630 GNLRACCLPWMW*PFLRLPLR 692
           GNL +C  PW+W  F R  L+
Sbjct: 330 GNLNSCMNPWLWFHFNRKQLK 350


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 464 CCG*KARSCICAPRCRC 414
           CCG     C C PRC C
Sbjct: 79  CCGCGCGCCCCRPRCCC 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,422,488
Number of Sequences: 27780
Number of extensions: 315335
Number of successful extensions: 744
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)