Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0202.Seq
         (704 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38320.1 68418.m04625 expressed protein  ; expression support...    29   2.3  
At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3) iden...    29   4.0  
At3g28040.1 68416.m03500 leucine-rich repeat transmembrane prote...    28   6.9  
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)       27   9.2  

>At5g38320.1 68418.m04625 expressed protein  ; expression supported
           by MPSS
          Length = 212

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 67  PLAMLSLMFVLRRSKNFTSNVAIRMPPVIPINHYLGVLKTNKIEPRSYSI-IPCTKYSSS 243
           P+ M  +   + RSK       +  P +IPI  +  VL+  +I  + Y + +P   Y+S+
Sbjct: 73  PIEMKKIPEPIYRSKTDKYKTGLPRPEIIPIEDFEPVLEIEEIGDQEYEVKLPLLPYNST 132


>At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3)
           identical to FUSCA3 GB:AAC35247 [Arabidopsis thaliana]
           (Plant J. 6, 379-387 (1994))
          Length = 313

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 21/67 (31%), Positives = 30/67 (44%)
 Frame = +1

Query: 100 RRSKNFTSNVAIRMPPVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSPFEHSNLFK 279
           RRS + + N+    PP+ PI+H    L   KI+PR    +   +  +S  S      L K
Sbjct: 53  RRSSS-SFNLLSFPPPMPPISHVPTPLPARKIDPRKLRFLFQKELKNSDVSSLRRMILPK 111

Query: 280 VKLSAHL 300
               AHL
Sbjct: 112 KAAEAHL 118


>At3g28040.1 68416.m03500 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profiles: PF00560 leucine
           rich repeat, PF00069 eukaryotic protein kinase domain
          Length = 1016

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 513 DLPSNCSSLKYLKCTHSDYE 572
           DL +NCSSL+YL  +H+  E
Sbjct: 167 DLFNNCSSLRYLSLSHNHLE 186


>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
          Length = 660

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 703 RVRFRRGSLRNGYHIQGRQQARKLPTPG 620
           R+ FRRG+     HIQ +Q   + P+PG
Sbjct: 499 RMGFRRGATNVQQHIQQQQLMHRNPSPG 526


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,413,879
Number of Sequences: 28952
Number of extensions: 288472
Number of successful extensions: 659
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)