Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0200.Seq
         (769 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    34   0.001
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       26   0.29 
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    26   0.29 
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    24   1.2  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   6.2  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   6.2  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 33.9 bits (74), Expect = 0.001
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 4   GQCVDACKAEPCGINATCDAVGHRSHCTCIAGYTG 108
           G+ VD C   PC   ATC    ++  C C  G+TG
Sbjct: 97  GEYVDWCSTNPCENQATCVQNKNQYQCLCGVGWTG 131



 Score = 29.9 bits (64), Expect = 0.023
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 13  VDACKAEPCGINATCDAVGHRSHCTCIAGYTG 108
           VD CK  PC    TC  + +   C+C +G  G
Sbjct: 223 VDDCKPNPCQNGGTCHDLVNSFSCSCPSGTLG 254



 Score = 29.5 bits (63), Expect = 0.031
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +1

Query: 13  VDACKAEPCGINATCDAVGHRSH--CTCIAGYTG 108
           ++ C + PC   ATC    H +H  C C  GYTG
Sbjct: 62  INLCDSSPCLNGATCQ--DHTTHYTCHCPYGYTG 93



 Score = 28.7 bits (61), Expect = 0.054
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 46  NATCDAVGHRSHCTCIAGYTGN 111
           N TC+ +G+   C C  GY+G+
Sbjct: 158 NGTCEDIGNSHRCHCSDGYSGS 179



 Score = 27.5 bits (58), Expect = 0.12
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = +1

Query: 13  VDACKAEPCGINATCDAVGHRSH-CTCIAGYTG 108
           V+ C   PC     C  + H  H CTC  G+ G
Sbjct: 339 VNFCATSPCQNGGVCTTI-HAGHKCTCPEGFYG 370



 Score = 26.6 bits (56), Expect = 0.22
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 13  VDACKAEPCGINATC-DAVGHRSHCTCIAGYTG 108
           ++ C + PC    TC D +G  S C C  G+ G
Sbjct: 185 INECDSAPCQNGGTCLDLIGSYS-CKCPKGFQG 216


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +1

Query: 13  VDACKAEPCGINATCDAVGHRSHCTCIAGYTGNPRIQCNATT 138
           ++ CK  PC    TC    +   C C  G+ G     CN  T
Sbjct: 69  INDCKVNPCENGGTCVDKINAFQCICKEGWEG---ALCNINT 107


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 467 YVLFTSFVYAFDVECFCG*CY 405
           Y++F S +Y  +V C C  CY
Sbjct: 910 YLIFVSTLYTANVVCICHVCY 930


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/13 (76%), Positives = 10/13 (76%), Gaps = 2/13 (15%)
 Frame = -2

Query: 183 FDLNIWCW--EIG 151
           F LNIWCW  EIG
Sbjct: 129 FVLNIWCWIVEIG 141


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 744 IAGSLAQPSSSVTRYSFSTLVDTSLVF 664
           IA     P  ++T+Y     VD S+VF
Sbjct: 197 IAALFTSPILAITQYGPEEYVDGSIVF 223


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = -2

Query: 288 SLQLSCISHPYLTFYVQKAVEIFNLKSDSNSVSQTF 181
           S+Q+ CI    ++FY++   +       SN+  +T+
Sbjct: 74  SIQIRCIESNMISFYLEATDDFAYFLEVSNNNFKTY 109


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,750
Number of Sequences: 336
Number of extensions: 4218
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)