Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0200.Seq
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    33   0.045
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    27   3.0  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    25   9.0  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    25   9.0  

>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 33.1 bits (72), Expect = 0.045
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +2

Query: 374 RSSNANSSETGNINHKSIPHQMHIQNW*TKRNSCIQCVHVNNSRHIANTGP 526
           +SS ++++E+ N  +   P  +H  N  T  N+ I     ++S HI+ TGP
Sbjct: 303 KSSYSSTTESSNFENLESPRNLHDSNVSTFNNTTILDDDYSSSMHISKTGP 353


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 539 SMRIISRSGDQVSSAEIGENLVLQVDV 619
           S  I++  GD+V++ EIG+ +V+  D+
Sbjct: 99  SCGIVAEKGDEVNNLEIGDRVVIAFDL 125


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 383 NANSSETGNINHKSIPHQMHIQNW*TKRNSCIQ 481
           N N S T +++   +PH + + N+ T  +SC Q
Sbjct: 292 NINES-TNHVDSSYLPHPIQLSNYFTLPSSCAQ 323


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +2

Query: 617  VQPSSIYGGFARSCVAKTSEVSTNVENEYLVTDEDGCAKDPAIF 748
            V+  +IYG   R  +     + + V    +  D+ GC ++P +F
Sbjct: 878  VERINIYGEQTRKSIKIRKIIDSEVTEWDVSVDDSGCIRNPQLF 921


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,224,658
Number of Sequences: 5004
Number of extensions: 67291
Number of successful extensions: 184
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)