Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0200.Seq
(769 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0286 + 13915705-13915984,13916478-13917062,13918188-139186... 35 0.082
04_04_1030 - 30249160-30250403,30250787-30251666 34 0.14
09_06_0279 + 22001589-22002237,22002909-22004044,22006050-220070... 32 0.58
04_04_1029 + 30243218-30244163,30246090-30246254,30246775-30247985 31 1.3
02_05_1158 - 34550049-34551241,34551354-34551521,34551847-345522... 30 1.8
04_03_0184 + 12395349-12395542,12396821-12397467,12398119-123986... 30 2.3
01_06_0948 - 33242219-33242530,33242632-33242782,33242874-332431... 30 2.3
11_08_0007 + 27551173-27551828,27552071-27552282,27553371-275535... 29 5.4
10_02_0085 - 5093036-5094285,5094737-5095255,5098698-5099373 29 5.4
09_06_0195 - 21477817-21478119,21478216-21478366,21478459-214786... 29 5.4
06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323... 29 5.4
02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852 29 5.4
05_05_0381 + 24531622-24532918,24535334-24535468,24535592-245357... 28 9.4
04_03_0618 - 18071612-18072795,18073007-18073072,18074101-180741... 28 9.4
03_02_0694 - 10448712-10448996,10449030-10449074,10449588-104496... 28 9.4
>04_03_0286 +
13915705-13915984,13916478-13917062,13918188-13918661,
13918963-13920208,13920282-13920297
Length = 866
Score = 34.7 bits (76), Expect = 0.082
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +1
Query: 40 GINATCDAVGHRSHCTCIAGYTGNPRIQ 123
G+N+T D +G+R C+C G+ GNP IQ
Sbjct: 417 GVNSTDDYIGYR--CSCTLGFQGNPYIQ 442
>04_04_1030 - 30249160-30250403,30250787-30251666
Length = 707
Score = 33.9 bits (74), Expect = 0.14
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Frame = +1
Query: 4 GQCVDACKAEP---CGINATC----DAVGHRSHCTCIAGYTGNPRIQC 126
G C +A ++ C N+ C D G+R C C GYTGNP I C
Sbjct: 247 GNCKEASRSRQTYMCKENSYCYEVEDGAGYR--CNCSGGYTGNPYIGC 292
>09_06_0279 +
22001589-22002237,22002909-22004044,22006050-22007058,
22007129-22007301,22007730-22008785
Length = 1340
Score = 31.9 bits (69), Expect = 0.58
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +1
Query: 19 ACKAEPCGINATCDAVGHRSHCTCIAGYTGNPRIQ--CNATTT 141
AC++ + T D G+R C C GY GNP + C TT
Sbjct: 180 ACRSANSKCSDTTDGAGYR--CRCSGGYEGNPYLHAGCQGLTT 220
>04_04_1029 + 30243218-30244163,30246090-30246254,30246775-30247985
Length = 773
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +1
Query: 4 GQCVDACKAE-PCGINATCDAV--GHRSHCTCIAGYTGNP 114
G C ++ PCG +TC+ V G C C GY GNP
Sbjct: 269 GNCEQNSASQYPCGSMSTCNDVYNGTSYICRCNEGYEGNP 308
>02_05_1158 -
34550049-34551241,34551354-34551521,34551847-34552231,
34552245-34552772
Length = 757
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 19 ACKAEPCGINATCDAVGHRSHCTCIAGYTGNPRIQCNAT 135
AC++E D VG+R C C GY GNP + T
Sbjct: 268 ACRSEWSECFDASDGVGYR--CRCSNGYQGNPYLDSGCT 304
>04_03_0184 +
12395349-12395542,12396821-12397467,12398119-12398655,
12399087-12399239,12399315-12399809,12400032-12400555
Length = 849
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 1 RGQCVDACKAEPCGINATCDAVGHRSHCTCIAGYTGNP 114
R CV A + G+N+T VG+R C C+ G+ GNP
Sbjct: 418 RYACVSA-NSTCLGVNSTDGYVGYR--CKCMDGFHGNP 452
>01_06_0948 -
33242219-33242530,33242632-33242782,33242874-33243111,
33243196-33243298,33243323-33243406,33243640-33243815,
33243943-33244074,33248406-33248967,33249084-33249842
Length = 838
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 16 DAC-KAEPCGINATCDAVGHRSHCTCIAGYT 105
D C + PCG N CD + C+C+ G+T
Sbjct: 295 DQCDEVSPCGANGVCD-TNNLPVCSCLRGFT 324
>11_08_0007 +
27551173-27551828,27552071-27552282,27553371-27553550,
27555154-27556187
Length = 693
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +1
Query: 4 GQCVDACKAEPC-GINATC-DAVGHRSH-CTCIAGYTGNPRI 120
G C A A C ++ C +A + + C C AGY+GNP +
Sbjct: 243 GSCSSATGAPACVSAHSYCVNATNGKGYLCNCSAGYSGNPYV 284
>10_02_0085 - 5093036-5094285,5094737-5095255,5098698-5099373
Length = 814
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 64 VGHRSHCTCIAGYTGNPRI 120
VG+R CTC+ GY GNP I
Sbjct: 377 VGYR--CTCLPGYDGNPYI 393
>09_06_0195 -
21477817-21478119,21478216-21478366,21478459-21478696,
21478786-21478996,21479162-21479361,21479453-21479545,
21479722-21481093
Length = 855
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 13 VDACKAEPCGINATCDAVGHRSHCTCIAGY 102
+D E CG +CDA G C C+ G+
Sbjct: 299 MDCFTYEHCGPGGSCDATGAVPTCKCLDGF 328
>06_03_0243 +
18629793-18630047,18630362-18630442,18631911-18632305,
18632471-18632926,18633156-18633247,18633528-18633683,
18635657-18636057
Length = 611
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = -1
Query: 547 SHGASRRRAGIGDVPAVVNMDTLNARVTFCSPV-LYMHLMWNAFVVDVTSFR*VCITRTK 371
S G RRR G+G+V A + + + P+ +H +W F +R C
Sbjct: 132 SGGRGRRRHGVGEVGAASRVISPHLHDVVLRPLRCRLHALWRCFF----HWRSRCCRHRG 187
Query: 370 LAKPLT*TRPQSP 332
L+ P + + P+SP
Sbjct: 188 LSPPPSRSSPRSP 200
>02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852
Length = 764
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 19 ACKAEPCGINATCDAVGHRSHCTCIAGYTGNPRIQCNAT 135
AC++ T D G+R C C GY GNP + T
Sbjct: 279 ACRSTNSECFDTIDGQGYR--CNCCQGYEGNPYLDGGCT 315
>05_05_0381 +
24531622-24532918,24535334-24535468,24535592-24535764,
24536029-24536239,24536287-24536554,24536664-24536814,
24536938-24537246
Length = 847
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +1
Query: 16 DACKA-EPCGINATCDAVGHRSHCTCIAGY 102
D C A PCG N CD C+C+ G+
Sbjct: 291 DQCDAVSPCGANGVCD-TNSLPVCSCLRGF 319
>04_03_0618 -
18071612-18072795,18073007-18073072,18074101-18074175,
18074234-18074963
Length = 684
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 46 NATCDAVGHRSHCTCIAGYTGNPRIQ 123
N TCD +R C C G+ GNP ++
Sbjct: 237 NETCDVARYR--CNCSQGFHGNPYLK 260
>03_02_0694 -
10448712-10448996,10449030-10449074,10449588-10449647,
10449817-10449890,10451056-10451149,10451851-10452023,
10452526-10452598
Length = 267
Score = 27.9 bits (59), Expect = 9.4
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = -1
Query: 748 ENSGVLSTTVLVCYKILIFYVS 683
+++G +STTV +C I++FY +
Sbjct: 134 QSNGTISTTVFLCASIVLFYTN 155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,448,488
Number of Sequences: 37544
Number of extensions: 454629
Number of successful extensions: 1283
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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