Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0200.Seq
         (769 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.5  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 161 QHQIFRSNVWLTELESDLRLK 223
           ++QI +SNVWL  + +D +L+
Sbjct: 69  KNQIMKSNVWLRFIWTDYQLQ 89


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 7/27 (25%), Positives = 14/27 (51%)
 Frame = +1

Query: 13  VDACKAEPCGINATCDAVGHRSHCTCI 93
           +D C ++ CGI   C+   + +   C+
Sbjct: 79  IDPCASKYCGIGKECELSPNSTIAVCV 105


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 447 KTGEQNVTLAFNVSMLTTAGTS 512
           K   Q++T   NVS LTT  TS
Sbjct: 711 KESTQSLTTTGNVSYLTTNNTS 732


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,596
Number of Sequences: 438
Number of extensions: 4636
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)