Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0200.Seq
         (769 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g21210.1 68414.m02651 wall-associated kinase 4                      32   0.48 
At1g21270.1 68414.m02658 wall-associated kinase 2 (WAK2) identic...    31   0.85 
At1g21230.1 68414.m02653 wall-associated kinase, putative simila...    30   2.0  
At3g26550.1 68416.m03314 DC1 domain-containing protein contains ...    29   3.4  
At2g41705.1 68415.m05153 camphor resistance CrcB family protein ...    29   4.5  

>At1g21210.1 68414.m02651 wall-associated kinase 4
          Length = 738

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +1

Query: 1   RGQCVDACKAEPCGINATCD--AVGHRSHCTCIAGYTGNPRIQ 123
           RG+       + CG+N  C   A G    C C  G+ GNP +Q
Sbjct: 232 RGETCGQVGEKKCGVNGICSNSASGIGYTCKCKGGFQGNPYLQ 274


>At1g21270.1 68414.m02658 wall-associated kinase 2 (WAK2) identical
           to wall-associated kinase 2 [Arabidopsis thaliana]
           GI:4826399; induced by salicylic acid or INA
           (PMID:10380805)
          Length = 732

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +1

Query: 37  CGINATC-DAVGHRSH-CTCIAGYTGNP 114
           CG N+TC D+ G   + C C+ G+ GNP
Sbjct: 243 CGGNSTCFDSTGGTGYNCKCLEGFEGNP 270


>At1g21230.1 68414.m02653 wall-associated kinase, putative similar
           to wall-associated kinase 1 [Arabidopsis thaliana]
           GI:3549626; expressed in leaves and stems & induced by
           salicylic acid or INA (PMID:10380805)
          Length = 733

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +1

Query: 37  CGINATC-DAV-GHRSHCTCIAGYTGNP 114
           CG N+TC D+  G   +C C+ G+ GNP
Sbjct: 244 CGGNSTCFDSTRGKGYNCKCLQGFDGNP 271


>At3g26550.1 68416.m03314 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 681

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 542 WSK*AEGRYWRCACCC*HGHIEC 474
           W K  E R+++C  CC   H+EC
Sbjct: 563 WDKRREMRFYKCNDCCTTLHVEC 585


>At2g41705.1 68415.m05153 camphor resistance CrcB family protein
           contains Pfam profile PF02537: CrcB-like protein
          Length = 461

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 117 SRISSVAGNASAMRAMPHRITGCVNTTRLSFAG 19
           SR SSVA + S  R++PH I   V++  +S AG
Sbjct: 17  SRESSVASSLSLSRSLPHLIDNDVDSESVSEAG 49


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,085,894
Number of Sequences: 28952
Number of extensions: 362821
Number of successful extensions: 1079
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)