Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0197.Seq
         (674 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022967-7|AAB69877.1|  485|Caenorhabditis elegans Hypothetical ...    31   0.57 
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati...    29   2.3  
AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium bind...    28   7.0  
AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical ...    28   7.0  
Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z66494-3|CAA91258.2|  520|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical ...    27   9.2  

>AF022967-7|AAB69877.1|  485|Caenorhabditis elegans Hypothetical
           protein C13A2.5 protein.
          Length = 485

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -3

Query: 672 KCFN-DSKIVSERSPSLELFNRNNFSIRYWSWNYRGCWH 559
           KC + D+K VS  SPSLE +  + ++  +WS  Y GC+H
Sbjct: 450 KCIHTDAKYVS--SPSLEPYTYHFYTDEFWS-KYYGCYH 485


>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
           protein protein.
          Length = 1439

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -2

Query: 526 YLKCTHPITRPRKSPVSLFFVTTSRAGSG*FARLLPSLDVVAV 398
           +LK + P+ R   SP + F    +R GSG  + ++  L VVAV
Sbjct: 24  WLKSSRPLARGALSPAAYFRDLENRHGSGASSPIVGGLSVVAV 66


>AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform d protein.
          Length = 679

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 424 LPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTI 320
           +P+  V+  ++ PS +S     + VTT  V+ TTI
Sbjct: 559 VPTTTVIQTTETPSTKSKTTKKVKVTTTTVSTTTI 593


>AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical
           protein E04A4.6 protein.
          Length = 466

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 60  DTANGSIYQFWFLRSYSVTWITVVILELIHAIRTL 164
           D+  G++   WF +++SV WI +V+   I   +T+
Sbjct: 224 DSLPGNVDNNWFEQTFSVYWIPLVVASEIETNQTV 258


>Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical
           protein T07D10.2 protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 441 GNLRACCLPWMW*PFLRLPLR 379
           GNL +C  PW+W  F R  L+
Sbjct: 330 GNLNSCMNPWLWFHFNRKQLK 350


>Z66494-3|CAA91258.2|  520|Caenorhabditis elegans Hypothetical
           protein C34C6.3 protein.
          Length = 520

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 102 SYSVTWITVVILELIHAIRTLTSDGMS 182
           SY+V+WIT       + IR + SDG++
Sbjct: 54  SYNVSWITPAASNSTYRIRLIDSDGLT 80


>AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical
           protein Y39A1C.2 protein.
          Length = 1066

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +3

Query: 396 ETATTSKEGSRRANYPLPAREVVTKNNDTGLLRGLVIG*VHFKYFNEEQLEGK 554
           E   T+K   +  ++     E +    D  LL  L+   VHF Y N++ LE K
Sbjct: 268 ELLKTTKIFEKTLHWLRANAEEIETGMDVRLLINLLANLVHFAYINDKTLESK 320


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,801,710
Number of Sequences: 27780
Number of extensions: 303028
Number of successful extensions: 790
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)