Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0196.Seq
         (728 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000660422 Cluster: fibronectin type III domain cont...    34   4.1  
UniRef50_Q9FBG9 Cluster: BlpU protein; n=13; Streptococcus|Rep: ...    33   9.5  

>UniRef50_UPI0000660422 Cluster: fibronectin type III domain
            containing 7; n=1; Takifugu rubripes|Rep: fibronectin
            type III domain containing 7 - Takifugu rubripes
          Length = 3263

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 19/60 (31%), Positives = 32/60 (53%)
 Frame = +1

Query: 400  LNCATNSTTLSPEPRANLRYLLHRLLSAFNRHQRSQFKRTNNSRRISHLKCGAAYKGSLT 579
            L C TN+   S  P + + Y  +   SAF+         +N+S  IS+L+CG +Y+ ++T
Sbjct: 1737 LECDTNTAVASWTPGSGILYY-NASASAFSFTHVQSCSTSNSSCNISNLQCGESYRVTVT 1795


>UniRef50_Q9FBG9 Cluster: BlpU protein; n=13; Streptococcus|Rep:
           BlpU protein - Streptococcus pneumoniae
          Length = 76

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -3

Query: 453 QVRTWFWAECGAVGGAVQS--VYHRCCWW 373
           + RTW  A  GAVGGA+     Y   CWW
Sbjct: 48  KTRTWQGAATGAVGGAILGGVAYAATCWW 76


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 570,143,843
Number of Sequences: 1657284
Number of extensions: 8942549
Number of successful extensions: 23730
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23715
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 58853922985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)