Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0196.Seq
         (728 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    26   0.36 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    26   0.36 
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   4.4  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   5.8  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   7.7  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   7.7  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 314 NARLSGYLQPYSPTYLVPQHHQQHLWY 394
           N  +  ++Q   P +  P H QQH+ Y
Sbjct: 164 NHHMGHHMQEQHPQHHQPHHQQQHMMY 190


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 314 NARLSGYLQPYSPTYLVPQHHQQHLWY 394
           N  +  ++Q   P +  P H QQH+ Y
Sbjct: 166 NHHMGHHMQEQHPQHHQPHHQQQHMMY 192


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 427 VWCCWWRSSVGVPQVLLVVLRHEVRGGVGLK 335
           V CCW +S + +PQ +L   +  +    GLK
Sbjct: 11  VACCWGKS-LSIPQQILNEFKSTLLPLFGLK 40


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +3

Query: 396 PTELRHQQHHTQPRTTCELAISPPPTSI 479
           PT L+     T P  +C+ A S   T +
Sbjct: 83  PTHLQSPNTQTHPSASCKYADSTSSTGV 110


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 5/13 (38%), Positives = 11/13 (84%)
 Frame = +1

Query: 223 RLRYTFPPITIHG 261
           +++  FPP+++HG
Sbjct: 289 KIKKAFPPLSLHG 301


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = -3

Query: 249 DRWERITEAGGIQATLRLPGTAR 181
           D W+  T  GG   T  L G  R
Sbjct: 118 DVWQSATSGGGANLTNSLTGPVR 140


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,153
Number of Sequences: 336
Number of extensions: 2271
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)