Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0196.Seq
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39714| Best HMM Match : Lipin_N (HMM E-Value=0)                     29   3.9  
SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_10514| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_37561| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_39714| Best HMM Match : Lipin_N (HMM E-Value=0)
          Length = 1311

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 362  VPQHHQQHLWYTD*TAPPTAPHS 430
            +P     H+W TD T+PP  PHS
Sbjct: 959  IPNSTSSHMWMTDSTSPP-VPHS 980


>SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1803

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 438 FWAECGAVGGAVQSVYHRCCWWCCGTRYV 352
           F  E GA G ++ ++YHR  W    TRY+
Sbjct: 893 FLVERGAFGVSLMALYHRQFWEVAHTRYL 921


>SB_10514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -3

Query: 702 TWRVSQTKSSRAFEHYPQALDYLDRLNRSF*TETNIG 592
           TW +S+T++  +FE++ Q L Y   L+ +F T   +G
Sbjct: 113 TWSLSKTETITSFENWKQNLMYTLSLDTNFSTYLAVG 149


>SB_37561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1209

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 693 VSQTKSSRAFEHYPQALDYLDRLNRSF*TETNIGRLSP 580
           V +  S+R   +  QALDY D  ++SF T   +  L P
Sbjct: 788 VYEITSTRVLTNQSQALDYSDLSSKSFNTSMTVPNLVP 825


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,859,074
Number of Sequences: 59808
Number of extensions: 290756
Number of successful extensions: 799
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)