Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0196.Seq
         (728 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X17551-1|CAA35586.1|  565|Drosophila melanogaster ORF1 for putat...    29   8.6  
BT014916-1|AAT47767.1|  409|Drosophila melanogaster RE14563p pro...    29   8.6  

>X17551-1|CAA35586.1|  565|Drosophila melanogaster ORF1 for putative
           RNA bindingprotein protein.
          Length = 565

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 439 PRANLRYLLHRLLSAFNRHQRSQFKRTNNSRRISHLKCGAAYK 567
           P  NL+YLLHR ++    H+R    +  N +   H K     K
Sbjct: 358 PIYNLQYLLHRRITVEEPHKRINPVQCTNCQEYGHTKAYCTLK 400


>BT014916-1|AAT47767.1|  409|Drosophila melanogaster RE14563p
           protein.
          Length = 409

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 439 PRANLRYLLHRLLSAFNRHQRSQFKRTNNSRRISHLKCGAAYK 567
           P  NL+YLLHR ++    H+R    +  N +   H K     K
Sbjct: 202 PIYNLQYLLHRRITVEEPHKRINPVQCTNCQEYGHTKAYCTLK 244


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,682,340
Number of Sequences: 53049
Number of extensions: 457639
Number of successful extensions: 1542
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1542
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3273062859
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)