Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0196.Seq
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024790-3|AAF60637.1|  446|Caenorhabditis elegans Hypothetical ...    32   0.48 
AF039718-5|AAP68905.1|  760|Caenorhabditis elegans Prion-like-(q...    29   3.4  
AF039718-4|AAP68906.2|  696|Caenorhabditis elegans Prion-like-(q...    29   3.4  

>AC024790-3|AAF60637.1|  446|Caenorhabditis elegans Hypothetical
           protein Y47D7A.6 protein.
          Length = 446

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 341 PYSPTYLVPQH-HQQHLWYTD*TAPPTAPHSAQNHVRTCDISSTDFYP 481
           P +PTY +P + + Q   Y+  TAPPT P  A  +  T    +T  YP
Sbjct: 243 PVAPTYQMPPNDYAQKPAYS--TAPPTYPTEAPTYPTTASYETTPSYP 288


>AF039718-5|AAP68905.1|  760|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
           isoform a protein.
          Length = 760

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
 Frame = +2

Query: 320 RLSGYLQPYSPTY-----LVPQHHQQHLWYTD*TAPPTAPHSAQNHVRTCDISST 469
           R SG    Y+P       L PQHHQQH        PP   ++ Q +     +S+T
Sbjct: 359 RFSGNSLSYNPPMPPVPPLPPQHHQQHQQQQQQQQPPLLQNTPQPYYYGSSVSTT 413


>AF039718-4|AAP68906.2|  696|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
           isoform b protein.
          Length = 696

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
 Frame = +2

Query: 320 RLSGYLQPYSPTY-----LVPQHHQQHLWYTD*TAPPTAPHSAQNHVRTCDISST 469
           R SG    Y+P       L PQHHQQH        PP   ++ Q +     +S+T
Sbjct: 261 RFSGNSLSYNPPMPPVPPLPPQHHQQHQQQQQQQQPPLLQNTPQPYYYGSSVSTT 315


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,812,638
Number of Sequences: 27780
Number of extensions: 205915
Number of successful extensions: 529
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)