Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0196.Seq
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.8  

>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 478 SAFNRHQRSQFKRTNNSRRISHLKCGAAYKGSLT 579
           S  +   ++Q+K  NN+   SH       +G+LT
Sbjct: 105 STSSNDPKNQYKNQNNNHYTSHQHLRTHLRGTLT 138


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = -3

Query: 393 YHRCCWW 373
           Y+ CCWW
Sbjct: 485 YYPCCWW 491


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = -3

Query: 393 YHRCCWW 373
           Y+ CCWW
Sbjct: 538 YYPCCWW 544


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 5/6 (83%), Positives = 5/6 (83%)
 Frame = -3

Query: 384 CCWWCC 367
           CC WCC
Sbjct: 11  CCCWCC 16


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 434 QNHVRTCDISSTDFYPLLIVIKE 502
           Q H+ TCD +     P+L+  +E
Sbjct: 184 QAHLDTCDFTRDKVAPILVRARE 206


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,794
Number of Sequences: 438
Number of extensions: 2783
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)