Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0196.Seq
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g36850.1 68418.m04415 hypothetical protein similar to At1g277...    28   5.5  
At1g34740.1 68414.m04319 Ulp1 protease family protein contains P...    28   5.5  
At1g27780.1 68414.m03399 Ulp1 protease family protein similar to...    28   5.5  
At2g41420.1 68415.m05111 proline-rich family protein contains pr...    28   7.3  
At1g73850.1 68414.m08550 expressed protein                             28   7.3  

>At5g36850.1 68418.m04415 hypothetical protein similar to At1g27780,
           At2g05560, At4g05280, At3g24385, At3g42590, At2g12110,
           At2g12100
          Length = 231

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 426 CGAVGGAVQSVYHRCCWWCCGTR 358
           C  V GA Q+V +RC  W C  R
Sbjct: 204 CYMVSGAFQNVCNRCYLWSCARR 226


>At1g34740.1 68414.m04319 Ulp1 protease family protein contains Pfam
            profile PF02902: Ulp1 protease family, C-terminal
            catalytic domain; similar to At3g24380, At5g36840,
            At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
            At2g05560, At4g08880, At1g34730, At1g27790, At1g27780,
            At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
            At1g25886, At4g03300
          Length = 1383

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 426  CGAVGGAVQSVYHRCCWWCCGTR 358
            C  V GA Q+V +RC  W C  R
Sbjct: 1356 CYMVSGAFQNVCNRCYLWSCARR 1378


>At1g27780.1 68414.m03399 Ulp1 protease family protein similar to
            At3g24380, At5g36840, At5g35010, At3g42740, At4g05290,
            At2g14770, At3g43390, At2g05560, At4g08880, At1g34730,
            At1g27790, At1g34740, At5g36850, At3g42730, At1g52020,
            At3g24390, At4g05280, At1g25886, At4g03300; contains Pfam
            profile PF02902: Ulp1 protease family, C-terminal
            catalytic domain
          Length = 1468

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 426  CGAVGGAVQSVYHRCCWWCCGTR 358
            C  V GA Q+V +RC  W C  R
Sbjct: 1441 CYMVSGAFQNVCNRCYLWSCARR 1463


>At2g41420.1 68415.m05111 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 98

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 36  QYVPPPQHNKRDSSGGCRE 92
           QY PPPQH ++ SS G  E
Sbjct: 64  QYPPPPQHQQQQSSPGFLE 82


>At1g73850.1 68414.m08550 expressed protein 
          Length = 575

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/55 (25%), Positives = 32/55 (58%)
 Frame = +1

Query: 400 LNCATNSTTLSPEPRANLRYLLHRLLSAFNRHQRSQFKRTNNSRRISHLKCGAAY 564
           L+ A +  ++  EPR+    ++H+L S  ++ ++ Q+  +N SR   +++  +AY
Sbjct: 260 LHEAESLKSIMVEPRSISERIVHKLSSNGHKKKQKQYPGSNGSRPNPYVELESAY 314


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,110,304
Number of Sequences: 28952
Number of extensions: 195451
Number of successful extensions: 452
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)