Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0191.Seq
         (775 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3LNZ9 Cluster: DNA-dependent ATPase of the nucleotide ...    34   3.4  
UniRef50_A0PA46 Cluster: DNA repair and recombination protein MU...    34   4.5  
UniRef50_Q7S1P9 Cluster: DNA repair protein rad-5; n=5; Pezizomy...    34   4.5  
UniRef50_Q7QS29 Cluster: GLP_661_13957_13397; n=1; Giardia lambl...    33   6.0  
UniRef50_P36607 Cluster: DNA repair protein rad5; n=1; Schizosac...    33   6.0  
UniRef50_A6RXA5 Cluster: Putative uncharacterized protein; n=2; ...    33   7.9  

>UniRef50_A3LNZ9 Cluster: DNA-dependent ATPase of the nucleotide
           excision repair factor 4 complex; n=2;
           Saccharomycetaceae|Rep: DNA-dependent ATPase of the
           nucleotide excision repair factor 4 complex - Pichia
           stipitis (Yeast)
          Length = 1343

 Score = 34.3 bits (75), Expect = 3.4
 Identities = 13/41 (31%), Positives = 27/41 (65%)
 Frame = +3

Query: 150 FCKTILVNLTH*LVNLAFRTTNICYVLEINNRYIVTGTPIS 272
           + K ++++  H + + + +T+N+C V++   R+ VTGTP S
Sbjct: 592 YWKRLIIDEGHSMNSKSSKTSNLCKVMQAERRWAVTGTPTS 632


>UniRef50_A0PA46 Cluster: DNA repair and recombination protein
           MUS41; n=1; Neurospora crassa|Rep: DNA repair and
           recombination protein MUS41 - Neurospora crassa
          Length = 1175

 Score = 33.9 bits (74), Expect = 4.5
 Identities = 13/49 (26%), Positives = 29/49 (59%)
 Frame = +3

Query: 123 INSQNVFQYFCKTILVNLTH*LVNLAFRTTNICYVLEINNRYIVTGTPI 269
           ++S+ +F      ++++  H + N   +T+  CY +   +R+++TGTPI
Sbjct: 666 LSSRGLFSLNFFRVILDEAHNIKNRQAKTSRACYEIAAEHRWVLTGTPI 714


>UniRef50_Q7S1P9 Cluster: DNA repair protein rad-5; n=5;
           Pezizomycotina|Rep: DNA repair protein rad-5 -
           Neurospora crassa
          Length = 1222

 Score = 33.9 bits (74), Expect = 4.5
 Identities = 13/49 (26%), Positives = 29/49 (59%)
 Frame = +3

Query: 123 INSQNVFQYFCKTILVNLTH*LVNLAFRTTNICYVLEINNRYIVTGTPI 269
           ++S+ +F      ++++  H + N   +T+  CY +   +R+++TGTPI
Sbjct: 713 LSSRGLFSLNFFRVILDEAHNIKNRQAKTSRACYEIAAEHRWVLTGTPI 761


>UniRef50_Q7QS29 Cluster: GLP_661_13957_13397; n=1; Giardia lamblia
           ATCC 50803|Rep: GLP_661_13957_13397 - Giardia lamblia
           ATCC 50803
          Length = 186

 Score = 33.5 bits (73), Expect = 6.0
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 221 TDICCSKRQVNKLMC*VNKNGFAKILKDILGINSLARLKKQVL 93
           T+ICCS  +  K MC +N   F  +L D+L  N +  L +  L
Sbjct: 139 TEICCSLMETVK-MCPINNEEFDALLNDVLRANIIVGLNRDAL 180


>UniRef50_P36607 Cluster: DNA repair protein rad5; n=1;
           Schizosaccharomyces pombe|Rep: DNA repair protein rad5 -
           Schizosaccharomyces pombe (Fission yeast)
          Length = 1133

 Score = 33.5 bits (73), Expect = 6.0
 Identities = 17/69 (24%), Positives = 34/69 (49%)
 Frame = +3

Query: 126 NSQNVFQYFCKTILVNLTH*LVNLAFRTTNICYVLEINNRYIVTGTPISVTYLRLYNPGK 305
           +S  +F      ++++  H + N   +T   C+ +   NR+++TGTPI      LY+  K
Sbjct: 641 HSSGLFSVHWFRVVLDEGHNIRNRESKTAKACHSISSQNRWVITGTPIVNKLDDLYSLIK 700

Query: 306 RFYLKKYCD 332
               + +C+
Sbjct: 701 FMRYEPWCN 709


>UniRef50_A6RXA5 Cluster: Putative uncharacterized protein; n=2;
           Sclerotiniaceae|Rep: Putative uncharacterized protein -
           Botryotinia fuckeliana B05.10
          Length = 1065

 Score = 33.1 bits (72), Expect = 7.9
 Identities = 18/65 (27%), Positives = 33/65 (50%)
 Frame = +3

Query: 162 ILVNLTH*LVNLAFRTTNICYVLEINNRYIVTGTPISVTYLRLYNPGKRFYLKKYCDLRK 341
           ++++  H + N   + T  CY L    R+ +TGTP+      L +  K   +K Y +LR+
Sbjct: 402 VILDEAHTIKNRNAKATQACYSLRSQYRWCLTGTPMQNNLDELQSLIKFLRIKPYDNLRE 461

Query: 342 FSFKI 356
           +  +I
Sbjct: 462 WKDQI 466


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 646,897,196
Number of Sequences: 1657284
Number of extensions: 11909663
Number of successful extensions: 19517
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19512
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65027411410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)