Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0191.Seq
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    33   0.034
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    33   0.060
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    27   3.0  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    27   3.9  
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy...    26   6.9  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    26   6.9  

>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 33.5 bits (73), Expect = 0.034
 Identities = 17/69 (24%), Positives = 34/69 (49%)
 Frame = +3

Query: 126 NSQNVFQYFCKTILVNLTH*LVNLAFRTTNICYVLEINNRYIVTGTPISVTYLRLYNPGK 305
           +S  +F      ++++  H + N   +T   C+ +   NR+++TGTPI      LY+  K
Sbjct: 641 HSSGLFSVHWFRVVLDEGHNIRNRESKTAKACHSISSQNRWVITGTPIVNKLDDLYSLIK 700

Query: 306 RFYLKKYCD 332
               + +C+
Sbjct: 701 FMRYEPWCN 709


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 32.7 bits (71), Expect = 0.060
 Identities = 16/66 (24%), Positives = 35/66 (53%)
 Frame = +3

Query: 135 NVFQYFCKTILVNLTH*LVNLAFRTTNICYVLEINNRYIVTGTPISVTYLRLYNPGKRFY 314
           ++F ++   I+++  H + N + ++   C  L+  NR+ +TGTP+      LY+  K  +
Sbjct: 372 SLFAFYWWRIILDEAHTIKNKSSKSALACCALQGINRWCLTGTPLQNNVDELYSLVKFLH 431

Query: 315 LKKYCD 332
           +  + D
Sbjct: 432 INPFND 437


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 219 CYVLEINNRYIVTGTPISVTYLRLYNPGKRFYLKKYCDLRKFS 347
           C +LE   R+ ++GTP+       Y+  K   +K Y D   FS
Sbjct: 555 CCLLESTYRWCLSGTPMQNGVEEFYSLIKFLRIKPYSDWSSFS 597


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +3

Query: 162 ILVNLTH*LVNLAFRTTNICYVLEINNRYIVTGTPISVTYLRLYNPGKRFYLKKYC 329
           I+++  H + N        C  L+   R+ ++GTPI       Y+  K   +K YC
Sbjct: 394 IVLDEAHTIRNRDTLAAKCCVKLDAKYRWCLSGTPIQNHIDEFYSLLKFLRIKPYC 449


>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -2

Query: 300 LDYITLNMLQILVYLLRYTCYLS 232
           + ++++N L +L+YL+   CY+S
Sbjct: 273 IKWMSINQLYLLIYLISGFCYIS 295


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 543 YFFYRHNI*LVNEIDNLTSVI 481
           YFFYRHN  ++++  N   V+
Sbjct: 298 YFFYRHNNYIISDSSNTREVL 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,888,623
Number of Sequences: 5004
Number of extensions: 56615
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)