Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0191.Seq
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1459 + 26681619-26682419,26682600-26682912,26683861-26684672     32   0.58 
01_06_0919 - 32993752-32993856,32994383-32994592,32994666-329952...    29   3.1  

>07_03_1459 + 26681619-26682419,26682600-26682912,26683861-26684672
          Length = 641

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 162 ILVNLTH*LVNLAFRTTNICYVLEINNRYIVTGTPISVTYLRLY 293
           ++++  H + N A R T     L    R++VTGTPI  +   LY
Sbjct: 186 VILDEAHVIKNSAARQTKAVIALNAERRWVVTGTPIQNSSFDLY 229


>01_06_0919 -
           32993752-32993856,32994383-32994592,32994666-32995220,
           32995705-32995926,32996381-32996511,32997456-32998353,
           32998453-32998530,32998612-32998683,32998728-32998763,
           32999413-33000353,33000531-33000659,33000751-33000894,
           33000994-33001060,33002434-33002502,33003144-33003278
          Length = 1263

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +3

Query: 192 NLAFRTTNICYVLEINNRYIVTGTPISVTYLRLYNPGKRFYLKKYCDLRKFSFKI 356
           N   +    C+ L    R+ ++GTPI      LY+  +      Y + +KF F I
Sbjct: 774 NYRTQVARACWGLRAKRRWCLSGTPIQNAVEDLYSYFRFLRYDPYAEYKKFCFMI 828


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,608,831
Number of Sequences: 37544
Number of extensions: 266525
Number of successful extensions: 335
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)