Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0191.Seq
         (775 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20108| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_55804| Best HMM Match : Acyl_transf_1 (HMM E-Value=1.2e-07)         29   3.2  
SB_23855| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_12448| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_20108| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 688 PVIYLRCRSEEFCDCQWNTKS 626
           PV+Y+RC   ++C   W+ KS
Sbjct: 359 PVLYIRCEDPKYCPVLWHYKS 379


>SB_55804| Best HMM Match : Acyl_transf_1 (HMM E-Value=1.2e-07)
          Length = 1306

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 688  PVIYLRCRSEEFCDCQWNTKS 626
            PV+Y+RC   ++C   W+ KS
Sbjct: 1128 PVLYIRCEDPKYCPVLWHYKS 1148


>SB_23855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +3

Query: 162 ILVNLTH*LVNLAFRTTNICYVLEINNRYIVTGTPISVT 278
           ++ N+ + + N+A+  TN+ Y++  N  Y++T     +T
Sbjct: 49  VITNMAYLITNMAYLITNVAYLI-TNMAYLITNMAYLIT 86


>SB_12448| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
 Frame = +3

Query: 141  FQYFCKTILVNLTH*LVNLAFRTTNICYVLEINNRYIVTGTPISVTYLRLYNPGKRF--- 311
            F  F  ++L  +T   V LA  T  ICY+L+   RYI     +S+ +L+     + F   
Sbjct: 1067 FLLFVISMLYIMT--FVQLALPTDTICYLLQ-PWRYISCTLSVSILFLKTNRIVRAFQTV 1123

Query: 312  ---YLKKYCDLRKFSFKIFLNITC 374
               + KKY   RK  F   L + C
Sbjct: 1124 VPEWFKKYVLDRKRQFIAVLVLNC 1147


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,610,283
Number of Sequences: 59808
Number of extensions: 348595
Number of successful extensions: 454
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)