Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0190.Seq
(689 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 128 3e-30
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 85 5e-17
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 73 2e-13
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 44 2e-04
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.29
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 32 0.38
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 31 0.67
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 31 1.2
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 2.0
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_33738| Best HMM Match : Pox_A32 (HMM E-Value=0.33) 28 6.2
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 28 6.2
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_42261| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 128 bits (310), Expect = 3e-30
Identities = 58/60 (96%), Positives = 59/60 (98%)
Frame = +2
Query: 23 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 202
MGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
Score = 90.2 bits (214), Expect = 1e-18
Identities = 45/66 (68%), Positives = 49/66 (74%), Gaps = 6/66 (9%)
Frame = +3
Query: 510 KGWQVER------KEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVG 671
K W +ER KE A G L E LD+ILPP+RP+ PLRLPLQDVYKIGGIGTVPVG
Sbjct: 65 KQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPSGLPLRLPLQDVYKIGGIGTVPVG 124
Query: 672 RVETGV 689
RVETGV
Sbjct: 125 RVETGV 130
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 85.0 bits (201), Expect = 5e-17
Identities = 34/83 (40%), Positives = 58/83 (69%)
Frame = +2
Query: 2 FEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKN 181
+E+EA+E + ++ +W LD + ER++G T+++ F+T + T++DAPGH+ F+ N
Sbjct: 179 YEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPN 238
Query: 182 MITGTSQADCAVLIVAAGTGEFE 250
MI+G +QAD VL+++A GEFE
Sbjct: 239 MISGATQADLGVLVISARKGEFE 261
Score = 71.3 bits (167), Expect = 7e-13
Identities = 30/57 (52%), Positives = 44/57 (77%)
Frame = +1
Query: 262 KNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 432
+ GQTREHA+LA T GVK L++ VNKMD ++E R+EEIK +++ ++KK+G+NP
Sbjct: 266 RGGQTREHAMLAKTAGVKHLVILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 72.9 bits (171), Expect = 2e-13
Identities = 31/53 (58%), Positives = 42/53 (79%)
Frame = +2
Query: 95 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEA 253
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEA
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEA 53
Score = 41.9 bits (94), Expect = 5e-04
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = +1
Query: 268 GQTREHALLAFTLGVKQLIVGVNKMD 345
GQTREHA+L +LGV QLIV +NK+D
Sbjct: 59 GQTREHAILVRSLGVTQLIVAINKLD 84
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 43.6 bits (98), Expect = 2e-04
Identities = 19/78 (24%), Positives = 38/78 (48%)
Frame = +2
Query: 8 KEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMI 187
+EA + K D ++ ER+RGI++ ++ F + I+D PGH+DF ++
Sbjct: 38 QEAGAVKSNKIKKGATSDFMEIERQRGISVATSVLAFNYRDKKINILDTPGHKDFAEDTF 97
Query: 188 TGTSQADCAVLIVAAGTG 241
+ D ++++ G
Sbjct: 98 RTLTAVDSVIVVIDVAKG 115
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 137 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 241
+T ID PGH F G + D VL+VAA G
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 32.3 bits (70), Expect = 0.38
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +2
Query: 86 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 232
GIT I + + + +D PGH F G D +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 31.5 bits (68), Expect = 0.67
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 14/83 (16%)
Frame = +2
Query: 59 DKLKAERERGITIDIALWKFETSK-------------YYVTIIDAPGHRDFIKNMITGTS 199
DK +ERGIT+D+ F+ + +T++D PGH IK +I G
Sbjct: 65 DKNPQSQERGITLDLGFSSFQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGGAQ 124
Query: 200 -QADCAVLIVAAGTGEFEAVSLR 265
+C + G G+ V +R
Sbjct: 125 IIGECGT--IEGGFGQSGKVKIR 145
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +2
Query: 62 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 229
+ K E ER ITI + Y +D PGH + M+ G + D A+L++A
Sbjct: 49 RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLLIA 96
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 143 IIDAPGHRDFIKNMITGTSQADCAVLIV 226
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +2
Query: 53 VLDKLKAERERGITI 97
VLDKL+ ERERGIT+
Sbjct: 1977 VLDKLQVERERGITV 1991
>SB_33738| Best HMM Match : Pox_A32 (HMM E-Value=0.33)
Length = 437
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 556 HFPSALPSLRSTCHPLTKAFWLKAPTCCLRA 464
H L +LRS+C P ++AF L++ C R+
Sbjct: 113 HTRQGLATLRSSCTPTSRAFALQSTACETRS 143
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 131 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 241
+ + +ID+PGH DF + D A+++V +G
Sbjct: 99 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +1
Query: 346 STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 486
ST S+ FE KK +S+ K +P+ + FVP WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113
>SB_42261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/60 (30%), Positives = 23/60 (38%)
Frame = -2
Query: 643 ILYTSCRGRRRGLSVGRAGGRMASRASMRHFPSALPSLRSTCHPLTKAFWLKAPTCCLRA 464
I+Y R L+V R S R P A + TC P TK+ + T C A
Sbjct: 74 IIYEKTRPHAVSLTVKRTRPHAVSLTVKRTRPHACTAESQTCSPSTKSIGSECTTECTEA 133
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,517,658
Number of Sequences: 59808
Number of extensions: 514877
Number of successful extensions: 1614
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1612
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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