Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0189.Seq
         (738 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373...    31   1.3  
07_03_0846 - 21983581-21986055                                         29   2.9  
12_01_0856 + 8034181-8035425                                           29   3.9  
06_01_0655 + 4742267-4742531,4743313-4744136                           28   6.7  
03_05_0823 - 27970038-27970258,27970279-27970544,27970608-279706...    28   6.7  
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960...    28   8.9  

>06_03_1055 -
           27234824-27234838,27236087-27236125,27236322-27237388,
           27237422-27237630,27237650-27238053
          Length = 577

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -1

Query: 216 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 82
           A+ A +GK +   E  E   S+QCD T  + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473


>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +2

Query: 74  DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 223
           DL+D  G  +R    +C+T    S     PD   S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373


>12_01_0856 + 8034181-8035425
          Length = 414

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 710 QRITQCPKASSARTETSRGAKGQKLA*SRCSVRIGTAKARPIDPLV 573
           QRIT    +S+ R   +    GQ     RC V    AK +PID L+
Sbjct: 193 QRITDRTPSSARRQNRNDNVIGQSEDKLRCRVESVVAKKKPIDRLI 238


>06_01_0655 + 4742267-4742531,4743313-4744136
          Length = 362

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
 Frame = +2

Query: 74  DLRDPN-GLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPA 250
           ++RDP  G+R  +  F       +++  E    RG    ++ PD A +AS     + + A
Sbjct: 129 EIRDPRKGVRVWLGTFNSPEEAARAYDAEARRIRGKKAKVNFPDGAPVAS-----QRSHA 183

Query: 251 DVASHHRPLGRVHE-PNVRNCGSS---RTEQYYY 340
           + +S + P   + E P V + G+     T  Y Y
Sbjct: 184 EPSSMNMPAFSIEEKPAVMSAGNKTMYNTNAYAY 217


>03_05_0823 -
           27970038-27970258,27970279-27970544,27970608-27970657,
           27971272-27971538,27971633-27972001,27972373-27973278
          Length = 692

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
 Frame = +2

Query: 2   RHRTELYPDLRSR-DARVKKKTDSIDLRDPNGLRRRVSRFECET--RLVKSHCLEPPDSR 172
           RH   L  ++RS  D     KT  ++L    GL          +   L  SH L    + 
Sbjct: 144 RHVRMLTHEIRSTLDRHTILKTTLVELGGTLGLEECALWMPSRSGSSLQLSHTLRHQITV 203

Query: 173 GSTVSISLPDSARLASALEAFRHNPADVASHHRPLGRV 286
           GSTVSI+LP         + F  N A +  H  PL R+
Sbjct: 204 GSTVSINLP------VVNQVFSSNRAIIIPHTSPLARI 235


>03_05_0951 +
           29093962-29094373,29095291-29095388,29095689-29096087,
           29096999-29097724,29097802-29097968,29098046-29098311,
           29098396-29098581,29099072-29099346,29099435-29099683
          Length = 925

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -1

Query: 225 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSVFFL 52
           K+ AS A  G D     P R  GG K+    S  + SKR  + R + F     +L    L
Sbjct: 4   KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63

Query: 51  TRASR 37
           TRA+R
Sbjct: 64  TRAAR 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,362,606
Number of Sequences: 37544
Number of extensions: 432681
Number of successful extensions: 1194
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)