Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0187.Seq
(590 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_A6NKA3 Cluster: Uncharacterized protein COPE; n=10; Deu... 70 4e-11
UniRef50_O14579 Cluster: Coatomer subunit epsilon; n=42; Eumetaz... 70 4e-11
UniRef50_UPI00005A3B99 Cluster: PREDICTED: similar to epsilon su... 65 1e-09
UniRef50_Q9Y0Y5 Cluster: CG9543-PA; n=3; Sophophora|Rep: CG9543-... 61 2e-08
UniRef50_O64748 Cluster: Coatomer subunit epsilon-2; n=12; Magno... 60 3e-08
UniRef50_Q01CY6 Cluster: Coatomer epsilon subunit; n=2; Ostreoco... 60 5e-08
UniRef50_Q7Q558 Cluster: ENSANGP00000011535; n=1; Anopheles gamb... 59 7e-08
UniRef50_A5B5W9 Cluster: Putative uncharacterized protein; n=1; ... 54 2e-06
UniRef50_Q5DEQ9 Cluster: SJCHGC01641 protein; n=2; Schistosoma j... 48 2e-04
UniRef50_Q4PEW0 Cluster: Putative uncharacterized protein; n=1; ... 43 0.005
UniRef50_O62246 Cluster: Probable coatomer subunit epsilon; n=2;... 38 0.23
UniRef50_A2QRK2 Cluster: Function: epsilon-COP together with oth... 37 0.31
UniRef50_Q5KID6 Cluster: Expressed protein; n=1; Filobasidiella ... 36 0.54
UniRef50_UPI0000DD7E94 Cluster: PREDICTED: hypothetical protein;... 36 0.71
UniRef50_Q5B3K1 Cluster: Putative uncharacterized protein; n=1; ... 36 0.94
UniRef50_Q6MYF8 Cluster: Putative uncharacterized protein; n=1; ... 35 1.2
UniRef50_Q9AV59 Cluster: Putative uncharacterized protein OSJNBa... 34 2.2
UniRef50_Q6ZDB2 Cluster: Putative uncharacterized protein P0045D... 34 2.9
UniRef50_Q8FUJ4 Cluster: Putative uncharacterized protein; n=1; ... 33 3.8
UniRef50_UPI0000E822DC Cluster: PREDICTED: hypothetical protein,... 33 5.0
UniRef50_UPI0000D9D69E Cluster: PREDICTED: similar to beta1,4-N-... 33 5.0
UniRef50_A7HST9 Cluster: HemY domain protein precursor; n=1; Par... 33 5.0
UniRef50_Q86RT3 Cluster: Nucleobindin; n=4; Caenorhabditis|Rep: ... 33 5.0
UniRef50_Q4D142 Cluster: Putative uncharacterized protein; n=2; ... 33 5.0
>UniRef50_A6NKA3 Cluster: Uncharacterized protein COPE; n=10;
Deuterostomia|Rep: Uncharacterized protein COPE - Homo
sapiens (Human)
Length = 257
Score = 70.1 bits (164), Expect = 4e-11
Identities = 31/54 (57%), Positives = 43/54 (79%)
Frame = +3
Query: 6 AFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGIQDAHY 167
A T+Q LL ++R DLARK+LK +QD+++D TLTQLA AW++L GG +QDA+Y
Sbjct: 99 AMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAWVSLATGGEKLQDAYY 152
Score = 64.9 bits (151), Expect = 1e-09
Identities = 26/43 (60%), Positives = 34/43 (79%)
Frame = +2
Query: 353 KPPEVSARYMAQLLDSHPQHPFVKEYKAKTDEFQRLAAQYQPS 481
KPPEV+ RY++QL D+H HPF+KEY+AK ++F RL QY PS
Sbjct: 214 KPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRLVLQYAPS 256
>UniRef50_O14579 Cluster: Coatomer subunit epsilon; n=42;
Eumetazoa|Rep: Coatomer subunit epsilon - Homo sapiens
(Human)
Length = 308
Score = 70.1 bits (164), Expect = 4e-11
Identities = 31/54 (57%), Positives = 43/54 (79%)
Frame = +3
Query: 6 AFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGIQDAHY 167
A T+Q LL ++R DLARK+LK +QD+++D TLTQLA AW++L GG +QDA+Y
Sbjct: 150 AMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAWVSLATGGEKLQDAYY 203
Score = 64.9 bits (151), Expect = 1e-09
Identities = 26/43 (60%), Positives = 34/43 (79%)
Frame = +2
Query: 353 KPPEVSARYMAQLLDSHPQHPFVKEYKAKTDEFQRLAAQYQPS 481
KPPEV+ RY++QL D+H HPF+KEY+AK ++F RL QY PS
Sbjct: 265 KPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRLVLQYAPS 307
>UniRef50_UPI00005A3B99 Cluster: PREDICTED: similar to epsilon
subunit of coatomer protein complex isoform a isoform 3;
n=2; Eutheria|Rep: PREDICTED: similar to epsilon subunit
of coatomer protein complex isoform a isoform 3 - Canis
familiaris
Length = 279
Score = 64.9 bits (151), Expect = 1e-09
Identities = 26/43 (60%), Positives = 34/43 (79%)
Frame = +2
Query: 353 KPPEVSARYMAQLLDSHPQHPFVKEYKAKTDEFQRLAAQYQPS 481
KPPEV+ RY++QL D+H HPF+KEY+AK ++F RL QY PS
Sbjct: 236 KPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRLVLQYAPS 278
>UniRef50_Q9Y0Y5 Cluster: CG9543-PA; n=3; Sophophora|Rep: CG9543-PA
- Drosophila melanogaster (Fruit fly)
Length = 306
Score = 61.3 bits (142), Expect = 2e-08
Identities = 28/54 (51%), Positives = 39/54 (72%)
Frame = +3
Query: 6 AFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGIQDAHY 167
A ++QCLL + R DLA++ + +Q+I DD TLTQLAQAW+ L QG +QDA +
Sbjct: 141 ALSVQCLLRLQRVDLAKQLVAKMQEISDDATLTQLAQAWVALAQGTEQMQDAFH 194
>UniRef50_O64748 Cluster: Coatomer subunit epsilon-2; n=12;
Magnoliophyta|Rep: Coatomer subunit epsilon-2 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 293
Score = 60.5 bits (140), Expect = 3e-08
Identities = 27/53 (50%), Positives = 38/53 (71%)
Frame = +3
Query: 6 AFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGIQDAH 164
A +Q + M+R + A KQL+++Q I++D TLTQLA AWLNL GG IQ+A+
Sbjct: 141 ALNVQIFIKMHRAEYAEKQLRVMQQIDEDHTLTQLASAWLNLAVGGSKIQEAY 193
Score = 32.3 bits (70), Expect = 8.7
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 368 SARYMAQLLDSHPQHPFVKEYKAKTDEFQR 457
S+R+++QL SHP+H VK + D F+R
Sbjct: 258 SSRHLSQLKLSHPEHILVKRVSSAEDNFER 287
>UniRef50_Q01CY6 Cluster: Coatomer epsilon subunit; n=2;
Ostreococcus|Rep: Coatomer epsilon subunit -
Ostreococcus tauri
Length = 302
Score = 59.7 bits (138), Expect = 5e-08
Identities = 26/54 (48%), Positives = 35/54 (64%)
Frame = +3
Query: 6 AFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGIQDAHY 167
A + L AM+RP+LA K + +Q ++DD T+ QLA AW +L GG IQDA Y
Sbjct: 149 AVAVSVLCAMDRPELAEKHARAMQQVDDDSTVAQLASAWASLASGGKKIQDASY 202
>UniRef50_Q7Q558 Cluster: ENSANGP00000011535; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000011535 - Anopheles gambiae
str. PEST
Length = 306
Score = 59.3 bits (137), Expect = 7e-08
Identities = 26/51 (50%), Positives = 37/51 (72%)
Frame = +3
Query: 15 LQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGIQDAHY 167
+ CLL M+R DLA++ +Q+ +DD TLTQL+QAWLN+ GG +QDA +
Sbjct: 144 MHCLLKMSRVDLAKQVATTMQEKDDDATLTQLSQAWLNIQIGGEKLQDAFF 194
Score = 44.0 bits (99), Expect = 0.003
Identities = 25/79 (31%), Positives = 35/79 (44%)
Frame = +2
Query: 245 QRYGEEAEQQLTDAASRAPQXXXXXXXXXXXXXXXXKPPEVSARYMAQLLDSHPQHPFVK 424
Q+Y ++AEQ L + +R P K +RY+AQ+LD H V
Sbjct: 221 QKY-DDAEQVLRECLNRDPNNYDTLINLLALSQQRDKSSSQFSRYLAQILDDHKGSSLVA 279
Query: 425 EYKAKTDEFQRLAAQYQPS 481
Y + EF RL Q+ PS
Sbjct: 280 AYNKRQAEFDRLVLQFGPS 298
>UniRef50_A5B5W9 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 125
Score = 54.0 bits (124), Expect = 2e-06
Identities = 24/42 (57%), Positives = 31/42 (73%)
Frame = +3
Query: 6 AFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNL 131
A +Q L M+R D A KQLK++Q +++D TLTQLA AWLNL
Sbjct: 25 ALNVQIFLKMHRSDYAEKQLKIMQQMDEDHTLTQLANAWLNL 66
>UniRef50_Q5DEQ9 Cluster: SJCHGC01641 protein; n=2; Schistosoma
japonicum|Rep: SJCHGC01641 protein - Schistosoma
japonicum (Blood fluke)
Length = 296
Score = 47.6 bits (108), Expect = 2e-04
Identities = 23/46 (50%), Positives = 27/46 (58%)
Frame = +2
Query: 353 KPPEVSARYMAQLLDSHPQHPFVKEYKAKTDEFQRLAAQYQPSVAS 490
K EV R ++QL D + HPF+ EY K DEF R A Y PSV S
Sbjct: 251 KSTEVINRLISQLRDCYKDHPFLVEYTEKDDEFTRCAKHYAPSVPS 296
Score = 46.0 bits (104), Expect = 7e-04
Identities = 23/52 (44%), Positives = 33/52 (63%)
Frame = +3
Query: 6 AFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGIQDA 161
A T+QCLL MNR DLA K ++ +Q ++D QLA A + +GG +Q+A
Sbjct: 136 ALTVQCLLHMNRCDLAGKIVRRMQTADEDSLAVQLASALYYVKKGGDQLQEA 187
>UniRef50_Q4PEW0 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 286
Score = 43.2 bits (97), Expect = 0.005
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = +3
Query: 6 AFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGIQDAHY 167
A + LL+++R DLA K+ + DD L QL +AW+ L +GG Q A Y
Sbjct: 155 ALGVHILLSIHRLDLAEKEYLAARSWADDSLLIQLIEAWIGLAKGGRSTQQAFY 208
>UniRef50_O62246 Cluster: Probable coatomer subunit epsilon; n=2;
Caenorhabditis|Rep: Probable coatomer subunit epsilon -
Caenorhabditis elegans
Length = 292
Score = 37.5 bits (83), Expect = 0.23
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = +2
Query: 263 AEQQLTDAASRAPQXXXXXXXXXXXXXXXXKPPEVSARYMAQLLDSHPQHPFVKEYKAKT 442
AE+ L A R + K +V R+++QL HP HP+V ++ K
Sbjct: 221 AEELLESALERDNKDADVLINSIVSAQLNEKDDDVVERFISQLKHEHPNHPWVIDFNEKE 280
Query: 443 DEFQRLAA 466
EF R+A+
Sbjct: 281 AEFDRVAS 288
Score = 35.9 bits (79), Expect = 0.71
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = +3
Query: 3 RAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGIQDAHY 167
RA + L+ MN+ LA ++K + I++D TL+QLA A + ++DA Y
Sbjct: 135 RASKVFILIKMNKRKLAIGEVKKMNQIDEDATLSQLANALVTSFGASGKVKDALY 189
>UniRef50_A2QRK2 Cluster: Function: epsilon-COP together with other
COP-subunits assembels into the coatomer; n=16;
Pezizomycotina|Rep: Function: epsilon-COP together with
other COP-subunits assembels into the coatomer -
Aspergillus niger
Length = 324
Score = 37.1 bits (82), Expect = 0.31
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +3
Query: 6 AFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGIQDAHY 167
A +Q L NR DLA K+++ + D L LA++W+ + GG Q A Y
Sbjct: 166 ALIVQIHLQQNRSDLALKEVQAAKRWAQDSLLVNLAESWVGMRVGGEKYQAAFY 219
Score = 36.3 bits (80), Expect = 0.54
Identities = 22/77 (28%), Positives = 35/77 (45%)
Frame = +2
Query: 260 EAEQQLTDAASRAPQXXXXXXXXXXXXXXXXKPPEVSARYMAQLLDSHPQHPFVKEYKAK 439
EAE LT A + P KP E + + Q+ +P HP + + +AK
Sbjct: 251 EAEAALTAALQQYPDEAELIANTVVLNVLAGKPSEELEQRLEQI---NPAHPLLSDLQAK 307
Query: 440 TDEFQRLAAQYQPSVAS 490
++ F AA+Y P V++
Sbjct: 308 SELFDTAAAKYAPRVSA 324
>UniRef50_Q5KID6 Cluster: Expressed protein; n=1; Filobasidiella
neoformans|Rep: Expressed protein - Cryptococcus
neoformans (Filobasidiella neoformans)
Length = 306
Score = 36.3 bits (80), Expect = 0.54
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +3
Query: 6 AFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGIQDAHY 167
A +Q LL++NR DLA+ + D L Q +AW+ L G + ++Y
Sbjct: 154 AILVQLLLSLNRRDLAQATYNSAKKFGSDSMLIQAMEAWIGLKTGSQPLHQSYY 207
>UniRef50_UPI0000DD7E94 Cluster: PREDICTED: hypothetical protein;
n=1; Homo sapiens|Rep: PREDICTED: hypothetical protein -
Homo sapiens
Length = 182
Score = 35.9 bits (79), Expect = 0.71
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = -1
Query: 473 GTARPDVGTRPSWPCIPSRRDAGGGCRATGPCIGPTPPVVSR 348
G+A V RP W P AGG R PC GP+ P +R
Sbjct: 90 GSANLPVAPRPGWTHTPDEPRAGGCERRASPCCGPSRPPRAR 131
>UniRef50_Q5B3K1 Cluster: Putative uncharacterized protein; n=1;
Emericella nidulans|Rep: Putative uncharacterized
protein - Emericella nidulans (Aspergillus nidulans)
Length = 190
Score = 35.5 bits (78), Expect = 0.94
Identities = 18/38 (47%), Positives = 19/38 (50%)
Frame = +1
Query: 370 GPIHGPVARQPPPASLREGIQGQDGRVPTSGRAVPTLS 483
GP GP A QPP AS G G PTS A P+ S
Sbjct: 85 GPSSGPSAVQPPAASQSSGADGATSAEPTSAEASPSPS 122
>UniRef50_Q6MYF8 Cluster: Putative uncharacterized protein; n=1;
Aspergillus fumigatus|Rep: Putative uncharacterized
protein - Aspergillus fumigatus (Sartorya fumigata)
Length = 237
Score = 35.1 bits (77), Expect = 1.2
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +3
Query: 27 LAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGIQDAHY 167
L NR DLA K+++ + D L LA++W+ + GG Q A Y
Sbjct: 113 LQQNRVDLALKEVQAAKRWAQDSLLVNLAESWVGMRIGGEKYQSAFY 159
>UniRef50_Q9AV59 Cluster: Putative uncharacterized protein
OSJNBa0093B11.17; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
OSJNBa0093B11.17 - Oryza sativa subsp. japonica (Rice)
Length = 318
Score = 34.3 bits (75), Expect = 2.2
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -1
Query: 467 ARPDVGT--RPSWPCIPSRRDAGGGCRATGPCIG 372
ARP +G RP+WP IP R AG G R G +G
Sbjct: 45 ARPGLGRAGRPTWPSIPRTRAAGCGARGGGGGLG 78
>UniRef50_Q6ZDB2 Cluster: Putative uncharacterized protein
P0045D08.135; n=2; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
P0045D08.135 - Oryza sativa subsp. japonica (Rice)
Length = 160
Score = 33.9 bits (74), Expect = 2.9
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 361 GGVGPIHGPVARQPPPASLREGIQGQDGRVPTSGRA 468
GG GP AR P PA +R+G G+ G +G A
Sbjct: 8 GGAGPARAAAARPPDPAGIRQGRVGRCGGAEPAGAA 43
>UniRef50_Q8FUJ4 Cluster: Putative uncharacterized protein; n=1;
Corynebacterium efficiens|Rep: Putative uncharacterized
protein - Corynebacterium efficiens
Length = 225
Score = 33.5 bits (73), Expect = 3.8
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = -3
Query: 477 GWYCAARRWNSSVLALYSFTKGC---WGWLSSNWAM 379
GWYC ++VLAL +F+ G GWL ++WA+
Sbjct: 101 GWYCGWAAIIATVLALINFSDGAAPQMGWLWASWAL 136
>UniRef50_UPI0000E822DC Cluster: PREDICTED: hypothetical protein,
partial; n=1; Gallus gallus|Rep: PREDICTED: hypothetical
protein, partial - Gallus gallus
Length = 273
Score = 33.1 bits (72), Expect = 5.0
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -1
Query: 428 IPSRRDAGGGCRATG-PCIGPTP-PVVS 351
+P RRD GGC ATG PC P P P +S
Sbjct: 109 VPLRRDEDGGCHATGAPCHPPEPLPALS 136
>UniRef50_UPI0000D9D69E Cluster: PREDICTED: similar to
beta1,4-N-acetylgalactosaminyltransferases IV; n=1;
Macaca mulatta|Rep: PREDICTED: similar to
beta1,4-N-acetylgalactosaminyltransferases IV - Macaca
mulatta
Length = 668
Score = 33.1 bits (72), Expect = 5.0
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 382 GPVARQP-PPASLREGIQGQDGRVPTSGRAVPTLSG*LNA 498
GP A QP PPA + GQ+G+ T G AVPT+ L++
Sbjct: 473 GPQATQPRPPARAQATQGGQEGQARTLGPAVPTVDSNLSS 512
>UniRef50_A7HST9 Cluster: HemY domain protein precursor; n=1;
Parvibaculum lavamentivorans DS-1|Rep: HemY domain
protein precursor - Parvibaculum lavamentivorans DS-1
Length = 512
Score = 33.1 bits (72), Expect = 5.0
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 51 ARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGIQDA 161
ARK +KL++D D LA WL++I+G G A
Sbjct: 288 ARKGMKLIEDAWSDAPHPDLADVWLDMIEGESGYDRA 324
>UniRef50_Q86RT3 Cluster: Nucleobindin; n=4; Caenorhabditis|Rep:
Nucleobindin - Caenorhabditis elegans
Length = 456
Score = 33.1 bits (72), Expect = 5.0
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 353 KPPEVSARYMAQLLDSHPQHPFVKEYKAKTDEFQRLAAQYQPSV 484
K ++ A +A +D PQ F K +KAK DE +RL Q + +
Sbjct: 99 KEEDIKAGNIADHIDDLPQEVFDKLHKAKFDEIERLRKQIEEQI 142
>UniRef50_Q4D142 Cluster: Putative uncharacterized protein; n=2;
Trypanosoma cruzi|Rep: Putative uncharacterized protein
- Trypanosoma cruzi
Length = 449
Score = 33.1 bits (72), Expect = 5.0
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Frame = -1
Query: 419 RRDAGGGCRATGPCIGPTPPVVSRDXXXXXXXXXXXXXXXXXGTLRLSV---AVQPLPHT 249
+ + GGG T PC P +V+R TLR+S AV PLP
Sbjct: 7 KEEKGGGQMRT-PCGNAPPSLVTRKIKQTHAYTIRGPTTNTYFTLRVSADTAAVPPLPRV 65
Query: 248 SGSCSP--STERGRTKSQ 201
+ + SP ST R R + Q
Sbjct: 66 AAAVSPSASTSRARARGQ 83
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 565,424,808
Number of Sequences: 1657284
Number of extensions: 10658350
Number of successful extensions: 36592
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 34986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36564
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41073165837
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -