Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0187.Seq
         (590 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    23   1.9  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.5  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   4.5  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   5.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   7.8  

>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 69  LLQDIEDDGTLTQLAQAWLNLIQG 140
           L   I++DG    LA  WL+L  G
Sbjct: 55  LTTKIDNDGESISLASGWLDLYLG 78


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 352 PEMRRGERKAEQQVGVLW 299
           P + + E K E+ +G+LW
Sbjct: 813 PAVLQCEAKGEKPIGILW 830


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -1

Query: 467 ARPDVGTRPSWPC 429
           ARP V T P W C
Sbjct: 45  ARPGVVTTPRWGC 57


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 456 VWPRSTNPQWLVKRMVYIN 512
           +WP+ T P  L  R V  N
Sbjct: 91  LWPQPTGPVTLASRAVTFN 109


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 240 LQPQHRERPDQVPVNRGVQITPSR 169
           L P+ +  P  VP+N   + TP +
Sbjct: 824 LTPERKMEPPGVPLNSTPRSTPDK 847


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,315
Number of Sequences: 336
Number of extensions: 2435
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14830622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)