Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0187.Seq
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce...    32   0.072
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    26   4.7  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    25   6.2  
SPBC409.20c |psh3||ER chaperone SHR3 homologue Psh3|Schizosaccha...    25   8.3  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   8.3  

>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 31.9 bits (69), Expect = 0.072
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 27  LAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGG-PGIQDAHY 167
           L  ++ + A + LK   D  D+  + QLAQ+W+ ++ GG     DA Y
Sbjct: 137 LREHKIEAAEQTLKQALDWADEEIVLQLAQSWIKIVSGGVESYNDAFY 184


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 370 GPIHGPVARQPPPASLREGIQGQDGRVPTSGRA 468
           GP+  P +R+P PAS     +    RVP SG +
Sbjct: 77  GPVRSPSSRKPLPAS-PSRTRDHSLRVPVSGHS 108


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 401 HPQHPFVKEYKAKTDEFQRLAAQYQPSV 484
           H +HPF ++         R AA Y PS+
Sbjct: 318 HHRHPFARQPDYSAHSIPRTAAPYAPSM 345


>SPBC409.20c |psh3||ER chaperone SHR3 homologue
           Psh3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = -2

Query: 466 RGQTLELVRLGLVFLHEGMLGVAVEQLGHVSGRHLRWFPEMRRGERKAEQQV 311
           R   L ++    V +   + GV + QLG+V G H++   +    E   EQ++
Sbjct: 136 RNMHLSVLAASHVLVEFLLAGVILIQLGYVFGYHVQSIQQREYAEDMREQEL 187


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 132  LDSAMLVLAASKCRHLQCPAATSVVCVQG 46
            LD  M+ + +S    LQC +ATSVV  +G
Sbjct: 1353 LDVGMMRVLSSDQLPLQCGSATSVVVSEG 1381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,196,841
Number of Sequences: 5004
Number of extensions: 38719
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)