Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0187.Seq
(590 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1355 + 32851514-32851696,32852132-32852224,32852334-328524... 63 2e-10
04_04_1127 - 31098233-31098326,31099968-31100047,31100198-311003... 59 2e-09
02_01_0198 + 1334563-1334994,1335872-1335919,1336096-1336351,133... 30 1.2
01_03_0224 + 13940419-13941786 29 2.1
09_06_0140 + 21090686-21091645,21092142-21092221,21092705-210929... 28 4.8
04_04_0748 + 27738155-27740290 28 6.4
03_02_0183 - 6225827-6226414,6226478-6226512,6227244-6227331,622... 28 6.4
01_01_0792 - 6171400-6171957 28 6.4
07_03_1784 - 29492511-29492804,29492913-29492999,29493076-294932... 27 8.5
07_03_1113 - 24068441-24068923 27 8.5
04_04_1139 + 31173271-31173462,31173928-31174087,31174318-311744... 27 8.5
>04_04_1355 +
32851514-32851696,32852132-32852224,32852334-32852485,
32852702-32852837,32852947-32853102,32853233-32853312,
32853475-32853568
Length = 297
Score = 62.9 bits (146), Expect = 2e-10
Identities = 27/53 (50%), Positives = 39/53 (73%)
Frame = +3
Query: 6 AFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGIQDAH 164
A +Q L M+R D A KQL+++Q +++D TLTQLA AW++L+ GG IQ+AH
Sbjct: 145 AMNVQICLQMHRSDHAEKQLRIMQQLDEDHTLTQLANAWVDLVMGGSKIQEAH 197
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 368 SARYMAQLLDSHPQHPFVKEYKAKTDEFQR 457
++RY+ QL +HP H VK + D F R
Sbjct: 262 ASRYLNQLKLAHPDHMLVKRMSSAEDSFDR 291
>04_04_1127 -
31098233-31098326,31099968-31100047,31100198-31100353,
31100481-31100616,31101195-31101346,31102307-31102390,
31102495-31102656
Length = 287
Score = 59.3 bits (137), Expect = 2e-09
Identities = 26/53 (49%), Positives = 38/53 (71%)
Frame = +3
Query: 6 AFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGIQDAH 164
A +Q + M+R D A KQLK++Q I++D TLTQLA AWL++ GG I++A+
Sbjct: 135 ALNVQIFIKMHRSDYAEKQLKIMQQIDEDHTLTQLANAWLDIAVGGSKIREAY 187
Score = 34.3 bits (75), Expect = 0.074
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +2
Query: 242 CQRYG--EEAEQQLTDAASRAPQXXXXXXXXXXXXXXXXKPPEVSARYMAQLLDSHPQHP 415
C G +EAE L +A ++ + KP S+RY++QL SHP H
Sbjct: 211 CMHMGSFDEAETLLLEALNKDAKDPETLANLIVCNLHLGKP---SSRYLSQLKLSHPDHV 267
Query: 416 FVKEYKAKTDEFQR 457
VK + D F+R
Sbjct: 268 LVKRAVSAEDNFER 281
>02_01_0198 +
1334563-1334994,1335872-1335919,1336096-1336351,
1336733-1336881,1336969-1337097,1337425-1337592,
1338416-1338610
Length = 458
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +2
Query: 353 KPPEVSARYMAQLLDSHPQHPFVKEYKAKTDEFQRLAAQYQPS 481
+P EV +++ DS P+HP +K++ + + + A+ QPS
Sbjct: 19 EPEEVE--WLSSSSDSEPEHPALKQWTPSSPDSEEAEAEQQPS 59
>01_03_0224 + 13940419-13941786
Length = 455
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 12 TLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGP 146
T +CL+ RP LAR L ++ D+ G ++ W + + GGP
Sbjct: 368 TAECLVLRRRPRLARTNLFVVTDVRRVG-FDRVDFGWGDPVYGGP 411
>09_06_0140 +
21090686-21091645,21092142-21092221,21092705-21092906,
21093052-21093327,21093414-21093482,21093638-21093785,
21094080-21094228,21094897-21095061,21095623-21095732,
21095868-21095946,21095947-21096240
Length = 843
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 309 PTCCSALRSPRRISGNHRR 365
PT C+ R PR G+HRR
Sbjct: 55 PTSCATARQPRHARGHHRR 73
>04_04_0748 + 27738155-27740290
Length = 711
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +1
Query: 352 ETTGGVGPIHGPVARQPPPASLREGIQGQDGRVPTSGRAVPTL 480
+ T G + A QPPPA+ G D + P G PTL
Sbjct: 211 KATSAFGLLSPEAALQPPPATTAPFHNGADMKPPLLGLPSPTL 253
>03_02_0183 -
6225827-6226414,6226478-6226512,6227244-6227331,
6228892-6228900
Length = 239
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 318 CSALRSPRRISGNHRRCRP 374
C L SPR + HRR RP
Sbjct: 101 CCILHSPRHVGARHRRLRP 119
>01_01_0792 - 6171400-6171957
Length = 185
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -1
Query: 443 PSWPCIPSRRDAGGGCRATGPCIGPTPPVVS 351
P+ I + +GGG T P + P PP +
Sbjct: 147 PATAAIAKKASSGGGATDTPPVVAPAPPAAA 177
>07_03_1784 -
29492511-29492804,29492913-29492999,29493076-29493222,
29493522-29493690,29493777-29494015,29494111-29494356,
29494419-29495084
Length = 615
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 427 IQGQDGRVPTSGRAVPTLS 483
+QG+ GR+P GRA+P L+
Sbjct: 70 LQGRGGRIPRVGRALPLLT 88
>07_03_1113 - 24068441-24068923
Length = 160
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +2
Query: 122 AESNSGRPWYPRRTLQRDGVI*TPRFTGTWSGLSRC---WGCSCQRYGEEAE 268
AE SGR P+R +R G P +G + WGC +GEE+E
Sbjct: 31 AEVGSGRGGGPQRRCRRMGPRSEPAAAAPAAGKKQRLWRWGCGGSPHGEESE 82
>04_04_1139 +
31173271-31173462,31173928-31174087,31174318-31174487,
31174566-31174788,31175053-31175207
Length = 299
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 45 DLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPG 149
DL K + + DI+ GT T +A L +GGPG
Sbjct: 109 DLTPKGFRTVVDIDTVGTYTMCYEALKYLKKGGPG 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,044,219
Number of Sequences: 37544
Number of extensions: 320483
Number of successful extensions: 1246
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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