Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0187.Seq
         (590 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF145691-1|AAD38666.1|  306|Drosophila melanogaster BcDNA.LD2988...    61   1e-09
AE014134-1103|AAF52392.1|  306|Drosophila melanogaster CG9543-PA...    61   1e-09
AY094852-1|AAM11205.1|  638|Drosophila melanogaster RE12569p pro...    29   4.7  
AE013599-2714|AAF57677.1|  638|Drosophila melanogaster CG10924-P...    29   4.7  
AE014134-405|AAF51258.2|  459|Drosophila melanogaster CG9870-PA ...    29   6.2  

>AF145691-1|AAD38666.1|  306|Drosophila melanogaster BcDNA.LD29885
           protein.
          Length = 306

 Score = 61.3 bits (142), Expect = 1e-09
 Identities = 28/54 (51%), Positives = 39/54 (72%)
 Frame = +3

Query: 6   AFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGIQDAHY 167
           A ++QCLL + R DLA++ +  +Q+I DD TLTQLAQAW+ L QG   +QDA +
Sbjct: 141 ALSVQCLLRLQRVDLAKQLVAKMQEISDDATLTQLAQAWVALAQGTEQMQDAFH 194


>AE014134-1103|AAF52392.1|  306|Drosophila melanogaster CG9543-PA
           protein.
          Length = 306

 Score = 61.3 bits (142), Expect = 1e-09
 Identities = 28/54 (51%), Positives = 39/54 (72%)
 Frame = +3

Query: 6   AFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGIQDAHY 167
           A ++QCLL + R DLA++ +  +Q+I DD TLTQLAQAW+ L QG   +QDA +
Sbjct: 141 ALSVQCLLRLQRVDLAKQLVAKMQEISDDATLTQLAQAWVALAQGTEQMQDAFH 194


>AY094852-1|AAM11205.1|  638|Drosophila melanogaster RE12569p
           protein.
          Length = 638

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 476 VGTARPDVGTRPSWPCIPSR 417
           VGT +  V   PSWPC P R
Sbjct: 215 VGTPKSGVQAMPSWPCDPER 234


>AE013599-2714|AAF57677.1|  638|Drosophila melanogaster CG10924-PA
           protein.
          Length = 638

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 476 VGTARPDVGTRPSWPCIPSR 417
           VGT +  V   PSWPC P R
Sbjct: 215 VGTPKSGVQAMPSWPCDPER 234


>AE014134-405|AAF51258.2|  459|Drosophila melanogaster CG9870-PA
           protein.
          Length = 459

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -2

Query: 517 FVLIYTMRLTSH*GLVLRG-QTLELVRLGLVFLHEGMLGVAVEQLGHVSGRHLRWFPEMR 341
           F+L +T  L S   L++   + L  + +GL+FLHE +L + + +    S  H  +F   R
Sbjct: 221 FILGFTKLLGSCYSLLVNSDEQLLALAIGLLFLHEVVLQLGLSEFVMSSAPHEGFFSANR 280

Query: 340 RG 335
            G
Sbjct: 281 EG 282


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,808,755
Number of Sequences: 53049
Number of extensions: 507015
Number of successful extensions: 1813
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1807
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2379510885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)