Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0187.Seq
(590 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93382-3|CAB07613.1| 292|Caenorhabditis elegans Hypothetical pr... 38 0.007
Z50858-2|CAD44134.1| 467|Caenorhabditis elegans Hypothetical pr... 33 0.15
Z50858-1|CAA90721.1| 453|Caenorhabditis elegans Hypothetical pr... 33 0.15
AF408757-1|AAO27836.1| 456|Caenorhabditis elegans nucleobindin ... 33 0.15
Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical pr... 29 2.5
AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical ... 29 2.5
AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein. 29 2.5
U88167-5|AAB42227.1| 107|Caenorhabditis elegans Hypothetical pr... 28 4.3
AL021175-2|CAA15966.1| 322|Caenorhabditis elegans Hypothetical ... 28 4.3
AF016655-3|AAU05587.1| 322|Caenorhabditis elegans Serpentine re... 28 4.3
Z93382-9|CAB07615.2| 462|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z73976-8|CAI79223.1| 215|Caenorhabditis elegans Hypothetical pr... 27 7.5
AF348168-1|AAK37546.1| 462|Caenorhabditis elegans TRF-1 protein. 27 7.5
AL021175-1|CAA15965.1| 307|Caenorhabditis elegans Hypothetical ... 27 10.0
>Z93382-3|CAB07613.1| 292|Caenorhabditis elegans Hypothetical
protein F45G2.4 protein.
Length = 292
Score = 37.5 bits (83), Expect = 0.007
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = +2
Query: 263 AEQQLTDAASRAPQXXXXXXXXXXXXXXXXKPPEVSARYMAQLLDSHPQHPFVKEYKAKT 442
AE+ L A R + K +V R+++QL HP HP+V ++ K
Sbjct: 221 AEELLESALERDNKDADVLINSIVSAQLNEKDDDVVERFISQLKHEHPNHPWVIDFNEKE 280
Query: 443 DEFQRLAA 466
EF R+A+
Sbjct: 281 AEFDRVAS 288
Score = 35.9 bits (79), Expect = 0.022
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = +3
Query: 3 RAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGIQDAHY 167
RA + L+ MN+ LA ++K + I++D TL+QLA A + ++DA Y
Sbjct: 135 RASKVFILIKMNKRKLAIGEVKKMNQIDEDATLSQLANALVTSFGASGKVKDALY 189
>Z50858-2|CAD44134.1| 467|Caenorhabditis elegans Hypothetical
protein F44A6.1b protein.
Length = 467
Score = 33.1 bits (72), Expect = 0.15
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 353 KPPEVSARYMAQLLDSHPQHPFVKEYKAKTDEFQRLAAQYQPSV 484
K ++ A +A +D PQ F K +KAK DE +RL Q + +
Sbjct: 96 KEEDIKAGNIADHIDDLPQEVFDKLHKAKFDEIERLRKQIEEQI 139
>Z50858-1|CAA90721.1| 453|Caenorhabditis elegans Hypothetical
protein F44A6.1a protein.
Length = 453
Score = 33.1 bits (72), Expect = 0.15
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 353 KPPEVSARYMAQLLDSHPQHPFVKEYKAKTDEFQRLAAQYQPSV 484
K ++ A +A +D PQ F K +KAK DE +RL Q + +
Sbjct: 96 KEEDIKAGNIADHIDDLPQEVFDKLHKAKFDEIERLRKQIEEQI 139
>AF408757-1|AAO27836.1| 456|Caenorhabditis elegans nucleobindin
protein.
Length = 456
Score = 33.1 bits (72), Expect = 0.15
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 353 KPPEVSARYMAQLLDSHPQHPFVKEYKAKTDEFQRLAAQYQPSV 484
K ++ A +A +D PQ F K +KAK DE +RL Q + +
Sbjct: 99 KEEDIKAGNIADHIDDLPQEVFDKLHKAKFDEIERLRKQIEEQI 142
>Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +1
Query: 346 SRETTGGVGPIHGPVARQPPPASLREGIQGQDGRVPTSGRAVP 474
S T VGP G + PP + R+ I G RVP S R P
Sbjct: 504 SVSTPSVVGPAFGKKVPEQPPVNFRKPI-GASNRVPLSQRVRP 545
>AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +1
Query: 346 SRETTGGVGPIHGPVARQPPPASLREGIQGQDGRVPTSGRAVP 474
S T VGP G + PP + R+ I G RVP S R P
Sbjct: 504 SVSTPSVVGPAFGKKVPEQPPVNFRKPI-GASNRVPLSQRVRP 545
>AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.
Length = 1057
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +1
Query: 346 SRETTGGVGPIHGPVARQPPPASLREGIQGQDGRVPTSGRAVP 474
S T VGP G + PP + R+ I G RVP S R P
Sbjct: 504 SVSTPSVVGPAFGKKVPEQPPVNFRKPI-GASNRVPLSQRVRP 545
>U88167-5|AAB42227.1| 107|Caenorhabditis elegans Hypothetical
protein D2092.8 protein.
Length = 107
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Frame = -1
Query: 440 SWPCIPSRRDAGGGC--RATGPCIG-PTPPVVS 351
S C+P GGGC A PC P PP VS
Sbjct: 15 SLACLPGLGGLGGGCGGAAASPCAAPPMPPPVS 47
>AL021175-2|CAA15966.1| 322|Caenorhabditis elegans Hypothetical
protein Y6E2A.2 protein.
Length = 322
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 383 AQLLDSHPQHPFVKEYKAKTDEFQRLAAQY 472
+QL D H F+K Y K D+F +AQY
Sbjct: 158 SQLKDLHVYPEFLKSYCLKPDDFAYASAQY 187
>AF016655-3|AAU05587.1| 322|Caenorhabditis elegans Serpentine
receptor, class z protein67 protein.
Length = 322
Score = 28.3 bits (60), Expect = 4.3
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 492 KRMVYINTNLCKRIKYVY*NVLNKDL 569
K ++ +N+ + KRIKY+Y + KD+
Sbjct: 133 KNIILVNSYIIKRIKYIYLGLFIKDI 158
>Z93382-9|CAB07615.2| 462|Caenorhabditis elegans Hypothetical
protein F45G2.6 protein.
Length = 462
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 291 PAPHSTPTCCSALRSPRRISGNHRRCR 371
PA + P C ALR P +++ +H CR
Sbjct: 13 PADCTCPICEQALRDPIKLNCDHHYCR 39
>Z73976-8|CAI79223.1| 215|Caenorhabditis elegans Hypothetical
protein T07C12.14 protein.
Length = 215
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -2
Query: 382 HVSGRHLRWFPEMRRGERKAEQQVGVLWGA 293
+ GR++ +F E+ + K E++VG+L GA
Sbjct: 140 YAKGRYIDFFKELIAEKEKREREVGMLLGA 169
>AF348168-1|AAK37546.1| 462|Caenorhabditis elegans TRF-1 protein.
Length = 462
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 291 PAPHSTPTCCSALRSPRRISGNHRRCR 371
PA + P C ALR P +++ +H CR
Sbjct: 13 PADCTCPICEQALRDPIKLNCDHHYCR 39
>AL021175-1|CAA15965.1| 307|Caenorhabditis elegans Hypothetical
protein Y6E2A.1 protein.
Length = 307
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 383 AQLLDSHPQHPFVKEYKAKTDEFQRLAAQY 472
+++ D H F+K Y K DEF +AQY
Sbjct: 114 SKMKDLHVYPEFLKSYCMKPDEFAYASAQY 143
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,548,994
Number of Sequences: 27780
Number of extensions: 234954
Number of successful extensions: 706
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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