Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0187.Seq
         (590 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30630.1 68414.m03746 coatomer protein epsilon subunit family...    62   2e-10
At2g34840.1 68415.m04278 coatomer protein epsilon subunit family...    60   8e-10
At3g14900.1 68416.m01884 expressed protein                             31   0.76 
At5g56220.1 68418.m07016 expressed protein                             30   1.3  
At1g55170.1 68414.m06301 expressed protein                             30   1.3  
At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger) fa...    28   4.1  
At5g54840.1 68418.m06830 GTP-binding family protein similar to S...    27   7.1  
At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein ...    27   7.1  
At1g55020.1 68414.m06284 lipoxygenase (LOX1) identical to SP|Q06327    27   7.1  
At3g30810.1 68416.m03942 hypothetical protein                          27   9.4  
At3g07100.1 68416.m00845 protein transport protein Sec24, putati...    27   9.4  

>At1g30630.1 68414.m03746 coatomer protein epsilon subunit family
           protein / COPE family protein similar to SP|O14579
           Coatomer epsilon subunit (Epsilon-coat protein)
           (Epsilon-COP) from Homo sapiens, SP|Q60445 from
           Cricetulus griseus; ESTs gb|Z17908, gb|AA728673,
           gb|N96555, gb|H76335, gb|AA712463, gb|W43247, gb|T45611,
           gb|T21160, gb|T14119 and AI100483 come from this gene
          Length = 292

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 28/53 (52%), Positives = 38/53 (71%)
 Frame = +3

Query: 6   AFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGIQDAH 164
           A  +Q  + M+R D A KQL+++Q I++D TLTQLA AWLNL  GG  IQ+A+
Sbjct: 140 ALNVQIFIKMHRSDFAEKQLRVMQQIDEDHTLTQLASAWLNLAVGGSKIQEAY 192



 Score = 32.7 bits (71), Expect = 0.19
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 368 SARYMAQLLDSHPQHPFVKEYKAKTDEFQR 457
           S+RY+ QL  SHP+H  VK   +  D F+R
Sbjct: 257 SSRYLNQLKLSHPEHVLVKRAASAEDNFER 286


>At2g34840.1 68415.m04278 coatomer protein epsilon subunit family
           protein / COPE family protein similar to SP|O14579
           Coatomer epsilon subunit (Epsilon-coat protein)
           (Epsilon-COP) from Homo sapiens, SP|Q60445 from
           Cricetulus griseus
          Length = 293

 Score = 60.5 bits (140), Expect = 8e-10
 Identities = 27/53 (50%), Positives = 38/53 (71%)
 Frame = +3

Query: 6   AFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGIQDAH 164
           A  +Q  + M+R + A KQL+++Q I++D TLTQLA AWLNL  GG  IQ+A+
Sbjct: 141 ALNVQIFIKMHRAEYAEKQLRVMQQIDEDHTLTQLASAWLNLAVGGSKIQEAY 193



 Score = 32.3 bits (70), Expect = 0.25
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 368 SARYMAQLLDSHPQHPFVKEYKAKTDEFQR 457
           S+R+++QL  SHP+H  VK   +  D F+R
Sbjct: 258 SSRHLSQLKLSHPEHILVKRVSSAEDNFER 287


>At3g14900.1 68416.m01884 expressed protein
          Length = 611

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +2

Query: 362 EVSARYMAQLLDSHPQ---HPFVKEYKAKTDEFQ 454
           E  +R +  LL +HP    HP+ KE+KAK +E +
Sbjct: 374 EKKSRVLKFLLGNHPNELLHPYTKEWKAKLEEME 407


>At5g56220.1 68418.m07016 expressed protein
          Length = 973

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
 Frame = -3

Query: 222 ERPDQVPVNRG--VQITPSRCS-VRLGYQGRPE--LDSAMLVLAASKCRH-LQCPAATSV 61
           E  D VP   G  + +   RCS  R      P    +S   +L   KCR+   C ++TSV
Sbjct: 382 EESDVVPTRNGKFISLELGRCSDSRSEAWSDPNGGKNSLKRLLKTKKCRNNSNCKSSTSV 441

Query: 60  VCVQGL 43
           VCV G+
Sbjct: 442 VCVNGV 447


>At1g55170.1 68414.m06301 expressed protein
          Length = 283

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 376 IHGPVARQPPPASLREGIQGQDGRV 450
           + GP   QPPP SL E +Q Q+G +
Sbjct: 28  LRGPPLLQPPPPSLLEDLQIQEGEI 52


>At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger)
           family protein low similarity to SP|P79263
           Inter-alpha-trypsin inhibitor heavy chain H4 precursor
           {Sus scrofa}; contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 641

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -3

Query: 219 RPDQVPVNRGVQITPSRCSVRLGYQGRPELDSAMLVLAASKCRHLQC 79
           RP   P + G++ +  RC++ L Y+ R E   A+     S   H  C
Sbjct: 52  RPGSTPSSSGLRFSKGRCAICL-YEIRKEDGKAIFTAECSHSFHFDC 97


>At5g54840.1 68418.m06830 GTP-binding family protein similar to
           SP|P87027 Septum-promoting GTP-binding protein 1 (GTPase
           spg1)(Sid3 protein) {Schizosaccharomyces pombe}
          Length = 288

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 477 GWYCAARRWNSSVLALYSFTK 415
           GWY  AR+WN + + +   TK
Sbjct: 194 GWYSQARKWNKTAIPILIGTK 214


>At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein
           contains Pfam domain PF02141: DENN (AEX-3) domain
          Length = 976

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/48 (22%), Positives = 25/48 (52%)
 Frame = +3

Query: 9   FTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGI 152
           F+ +C ++ +      +Q+K++  + DD TL  +      ++Q  PG+
Sbjct: 446 FSFKCQISTSHVKSNTRQIKIICQVADDATLYGVCLHVSEIVQRPPGV 493


>At1g55020.1 68414.m06284 lipoxygenase (LOX1) identical to SP|Q06327
          Length = 859

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = -2

Query: 397 VEQLGHVSGRHLRWFPEMRRGERKAEQQVGVLWGAGRCVCQLLFSLFPI 251
           V + GH   +   W+P+M+  E   E    ++W A      + F  +P+
Sbjct: 673 VREEGHGDKKSEPWWPKMQTREELVESCTIIIWVASALHAAVNFGQYPV 721


>At3g30810.1 68416.m03942 hypothetical protein 
          Length = 791

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 355 TTGGVGPIHGPVARQPPPASLREGIQGQDGRVPTS 459
           T GG+GPI  P  R   P   +   QG   R+  S
Sbjct: 39  TLGGIGPIRPPSIRADKPKKKKAAKQGGGTRMTNS 73


>At3g07100.1 68416.m00845 protein transport protein Sec24, putative
           similar to protein transport protein Sec24A
           (SEC24-related protein) [Homo sapiens] SWISS-PROT:O95486
          Length = 1038

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 385 PVARQPPPASLREGIQGQDGRVPTSGRAVPTLSG 486
           PVA  PPP S   G+ G +   P +   +P   G
Sbjct: 152 PVAMGPPPQSTTSGLPGANAYPPATDYHMPARPG 185


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,025,590
Number of Sequences: 28952
Number of extensions: 221667
Number of successful extensions: 664
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)