Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0186.Seq
         (789 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0269 + 2062467-2062475,2063252-2063303,2063668-2063743,206...    31   1.4  
07_03_1486 + 26899479-26899549,26899861-26899989,26900649-269008...    29   5.6  
09_04_0311 + 16585406-16585521,16585713-16586175                       28   7.4  

>05_01_0269 +
           2062467-2062475,2063252-2063303,2063668-2063743,
           2064156-2064288,2064400-2064578,2065228-2065495,
           2066250-2066342,2066667-2066776,2066887-2066905,
           2066985-2067170
          Length = 374

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/46 (32%), Positives = 32/46 (69%)
 Frame = -3

Query: 235 LAVRLNVFRMNKTEIKLLFALDDHRPRSLGGQASVTGRIYQQQDLI 98
           +AV++ +F +N+++ K+ + L + +PRSL G  S+ G+ +QQ + +
Sbjct: 297 IAVKV-MFELNRSK-KVEYLLTNKQPRSLHGLLSMDGQAFQQNEKV 340


>07_03_1486 +
           26899479-26899549,26899861-26899989,26900649-26900834,
           26901025-26901247,26901662-26901666,26901796-26901924,
           26902697-26902894,26903138-26903356,26903461-26903699,
           26903797-26903888,26904009-26904224,26904327-26904554,
           26904631-26904722,26904806-26904899,26905475-26905567,
           26905667-26906640,26906727-26906841,26907135-26908895
          Length = 1687

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 223 LNVFRMNKTEIKLLFALDDHRPRSL 149
           LN+ +MNKT ++L    DDHR + +
Sbjct: 597 LNIEQMNKTSVELFQMYDDHRRKGV 621


>09_04_0311 + 16585406-16585521,16585713-16586175
          Length = 192

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/20 (75%), Positives = 15/20 (75%)
 Frame = -3

Query: 178 ALDDHRPRSLGGQASVTGRI 119
           A DDHRPRSL G AS  GRI
Sbjct: 147 ATDDHRPRSLPG-ASWIGRI 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,503,809
Number of Sequences: 37544
Number of extensions: 300999
Number of successful extensions: 755
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)