Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0186.Seq
         (789 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam ...    29   2.7  
At3g19080.1 68416.m02423 SWIB complex BAF60b domain-containing p...    29   4.6  
At1g60690.1 68414.m06832 aldo/keto reductase family protein cont...    28   8.1  

>At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam
           profile: PF03399 SAC3/GANP family
          Length = 1720

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 223 LNVFRMNKTEIKLLFALDDHRPRSL 149
           LN+ +MNKT ++L    DDHR + +
Sbjct: 624 LNIEQMNKTSVELFQMYDDHRKKGI 648


>At3g19080.1 68416.m02423 SWIB complex BAF60b domain-containing
           protein contains Pfam profile PF02201: BAF60b domain of
           the SWIB complex
          Length = 462

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = -3

Query: 265 DSGSRDIFQILAVRLNVFRMNKTEIKLLFALDDHRPRSLGGQASVTGRIYQQQD 104
           D   R +F + ++  N+F+MNK   K ++ L+D+   S+  ++   G+   + D
Sbjct: 313 DESFRSLFPVESI--NMFQMNKQLTKHIWPLEDNAGESVSSKSPKNGKQKMESD 364


>At1g60690.1 68414.m06832 aldo/keto reductase family protein
           contains Pfam profile PF00248: oxidoreductase, aldo/keto
           reductase family
          Length = 345

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 321 GHFQAAKPS*SVVVLLNHIDIAGINFVACDESNSY 425
           GH+ A+KP    + L++H   +G+ F+  D S+ Y
Sbjct: 31  GHYGASKPETEAIALIHHAIHSGVTFL--DTSDMY 63


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,182,452
Number of Sequences: 28952
Number of extensions: 268765
Number of successful extensions: 648
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)