Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0185X.Seq
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   3.2  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   5.6  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   5.6  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   5.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.6  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    21   7.4  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   7.4  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 311 DTQLIVEGVVPDLLHVI 261
           + Q +V+ V PD+LH+I
Sbjct: 21  NNQTVVDKVPPDMLHLI 37


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 14/48 (29%), Positives = 19/48 (39%)
 Frame = +2

Query: 413 RHVRRHPGRALAVXXXXXXXXXXXXXXWCVPHVPIYEGYALPHAILRL 556
           R + RH  R +A                 +PHVPI++ Y     IL L
Sbjct: 334 RTLERHNIRTVAQSDETLQMIASMKIKEALPHVPIFDRYINREYILVL 381


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 14/48 (29%), Positives = 19/48 (39%)
 Frame = +2

Query: 413 RHVRRHPGRALAVXXXXXXXXXXXXXXWCVPHVPIYEGYALPHAILRL 556
           R + RH  R +A                 +PHVPI++ Y     IL L
Sbjct: 334 RTLERHNIRTVAQSDETLQMIASMKIKEALPHVPIFDRYINREYILVL 381


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 14/48 (29%), Positives = 19/48 (39%)
 Frame = +2

Query: 413 RHVRRHPGRALAVXXXXXXXXXXXXXXWCVPHVPIYEGYALPHAILRL 556
           R + RH  R +A                 +PHVPI++ Y     IL L
Sbjct: 334 RTLERHNIRTVAQSDETLQMIASMKIKEALPHVPIFDRYINREYILVL 381


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 518 YEGYALPHAILRLDLAGRDFTDYLMKI 598
           Y GY  P   +  D A  +FT+  MK+
Sbjct: 193 YAGYKNPDGTIIGDPANIEFTELCMKL 219


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = -2

Query: 478 TIPVVRPEAYSESTAWMATYMAGELKVSNMIWVIFSL 368
           T+P  + E   +  AWM     G L+  N  +  F +
Sbjct: 33  TLPGYKIECVGDDIAWMKFDKEGRLRAINPEYGFFGV 69


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 67  GMCKAGFAGD 96
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,001
Number of Sequences: 438
Number of extensions: 3406
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)