Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0181.Seq
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   2.4  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    27   3.1  
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub...    27   3.1  
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   4.1  
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ...    26   5.5  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    26   7.2  
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy...    25   9.5  

>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 260  RPLALQRDGVHVPLPSATNPFTAPILPPLN 171
            R  A +   V VP PSA +P   P LPP++
Sbjct: 1029 RASAYEPPTVSVPSPSALSPSVTPQLPPVS 1058


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 269 LRSRPLALQRDGVHVPLPSATNPFTAPILPPL 174
           LRS  L+LQ+  + +P P     F  PIL  L
Sbjct: 292 LRSLSLSLQKTSIQLPCPEPNFLFNQPILTEL 323


>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
           subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 490

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 113 NTASVHPDARRNLVEENTSMATLKTKSQQKYV 18
           N    +PD ++  VEE  S     T+SQQK++
Sbjct: 11  NVKQENPDEKKPKVEEPDSQNNASTQSQQKFL 42


>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 629 RILEKFPKIESVIITKRKRKLPLSPVGQ 712
           ++ E+    ESV I + K+K+PL P GQ
Sbjct: 163 KVAEESSHPESVSILEEKKKIPLYPNGQ 190


>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 471 STRNALLLHYRNWQGGGIYPCGLTRG 394
           STR   ++  R+W G G   CG+  G
Sbjct: 180 STRQVTIVPNRHWGGNGAIGCGVGHG 205


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 251 ALQRDGVHVPLPSATNPF 198
           A+  DG +VPLPS+TN +
Sbjct: 264 AMLADGNYVPLPSSTNTY 281


>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 465

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 175 KGGKMGAVNGFVAEGRGTCTPSRCRARGLD 264
           +  ++GA+N F +  R T   +   ARGLD
Sbjct: 321 QSNRLGALNKFKSGARSTLVATDVAARGLD 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,475,230
Number of Sequences: 5004
Number of extensions: 72522
Number of successful extensions: 202
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)