Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0181.Seq
         (804 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0351 - 17069974-17070232,17070470-17071751,17071908-170719...    51   1e-06
07_03_0200 - 15016084-15016342,15016814-15016869,15016963-150179...    46   5e-05
08_01_0081 - 574119-575204,575794-576191,576321-576382,576581-57...    43   3e-04
11_02_0028 + 7517196-7517206,7517256-7517312,7517423-7517503,751...    36   0.038
03_02_0731 - 10786122-10787018,10787859-10788449,10788659-107887...    29   4.3  
11_06_0296 + 22046649-22048202,22048524-22048703,22048811-220488...    28   7.6  

>10_08_0351 -
           17069974-17070232,17070470-17071751,17071908-17071969,
           17072109-17072181,17072399-17072466,17073023-17073207,
           17073311-17073452,17073665-17073720,17074003-17074056,
           17074679-17074782,17075012-17075112,17075717-17075790,
           17076482-17076560,17076668-17076744,17076875-17076931,
           17077058-17077168,17077254-17077334
          Length = 954

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
 Frame = +1

Query: 88  ASGWTEAVFPQANVRKALKTIFDNNVMKFKGGKMGAVNGFVAEGR--GTCTPSRCRARGL 261
           AS     +F +  +R AL+ IF+ NVMK KGG++GAVNG    G+   TC  SR    G+
Sbjct: 775 ASSGLPPLFDENKIRSALQKIFEFNVMKVKGGRLGAVNGMTPNGKVDETCMQSREIWTGV 834

Query: 262 DRSHVRPGLAHGL 300
                   L HG+
Sbjct: 835 TYGVAANMLLHGM 847


>07_03_0200 -
           15016084-15016342,15016814-15016869,15016963-15017960,
           15018707-15018768,15019242-15019274,15019697-15019881,
           15020033-15020133,15020783-15020795,15021216-15021319,
           15021593-15021693,15022773-15022849,15022965-15023021,
           15023158-15023268,15023803-15023859
          Length = 737

 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 21/49 (42%), Positives = 29/49 (59%)
 Frame = +1

Query: 88  ASGWTEAVFPQANVRKALKTIFDNNVMKFKGGKMGAVNGFVAEGRGTCT 234
           AS     +F +  ++  L+ IFD NVM+ KGG+MGAVNG    G+   T
Sbjct: 589 ASSGLPPLFDEGRIKCTLQKIFDYNVMRVKGGRMGAVNGMHPNGKAFTT 637


>08_01_0081 -
           574119-575204,575794-576191,576321-576382,576581-576653,
           576754-576824,576961-577148,577230-577377,577465-577503,
           577601-577656,577745-577798,577900-578003,578117-578217,
           578726-578796,578912-578968,579306-579422,579653-579682
          Length = 884

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 22/57 (38%), Positives = 31/57 (54%)
 Frame = +1

Query: 49  VAIDVFSSTRFLRASGWTEAVFPQANVRKALKTIFDNNVMKFKGGKMGAVNGFVAEG 219
           +  D  +   + RA G  E +      R+AL T+ D NVM+ KGG +GAVNG   +G
Sbjct: 684 IQADQLAGQWYARACG-LEPIVDGDKARRALATVLDYNVMRVKGGAIGAVNGMRPDG 739



 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 257 VWIGVTYGLASLMVYEG 307
           VW GVTY +A+ M++EG
Sbjct: 751 VWPGVTYAVAAAMIHEG 767


>11_02_0028 +
           7517196-7517206,7517256-7517312,7517423-7517503,
           7518009-7518108,7518454-7518507,7519045-7519115,
           7519248-7519455,7519647-7519700,7519934-7520025,
           7520090-7520285,7521158-7521339,7521429-7521496,
           7522848-7522920,7523010-7523071,7523155-7524079,
           7524843-7525133,7525601-7525871
          Length = 931

 Score = 35.9 bits (79), Expect = 0.038
 Identities = 16/28 (57%), Positives = 20/28 (71%)
 Frame = +1

Query: 136 ALKTIFDNNVMKFKGGKMGAVNGFVAEG 219
           AL+ I+  NVMKFK GK GA+NG   +G
Sbjct: 764 ALEKIYSFNVMKFKDGKRGAMNGMWPDG 791



 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 206 LWPKEGXXXXXXXXXXXVWIGVTYGLASLMVYEG 307
           +WP +G           +W GVTY LA+ M+ EG
Sbjct: 787 MWP-DGTVDMSAMQSREIWPGVTYALAATMIQEG 819


>03_02_0731 -
           10786122-10787018,10787859-10788449,10788659-10788740,
           10789914-10790107
          Length = 587

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 227 VPLPSATNPFTAPILPPLNFITLLSKIVFSAFRTFACGNT 108
           +PLP   N  TA   PP + +  +SK+ F    T+    T
Sbjct: 327 LPLPRVVNVMTAGAAPPPSVLASMSKLGFRITHTYGLSET 366


>11_06_0296 +
           22046649-22048202,22048524-22048703,22048811-22048860,
           22049443-22049564,22051007-22051119,22051227-22051436,
           22052152-22052265,22052529-22052658,22053010-22053143,
           22053997-22054077,22054181-22054267
          Length = 924

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 491 YNGCHTLQPETHYCFTTEIGRVVVSTHAD 405
           + G H  +   H+CF +EI   V+++ AD
Sbjct: 759 FQGLHISEASLHFCFNSEIEGRVINSFAD 787


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,386,890
Number of Sequences: 37544
Number of extensions: 503909
Number of successful extensions: 1204
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)