Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0181.Seq
         (804 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5299| Best HMM Match : No HMM Matches (HMM E-Value=.)               52   7e-07
SB_5128| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.1  
SB_2410| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.1  
SB_26157| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_29257| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_35068| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  

>SB_5299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 797

 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 23/41 (56%), Positives = 30/41 (73%)
 Frame = +1

Query: 103 EAVFPQANVRKALKTIFDNNVMKFKGGKMGAVNGFVAEGRG 225
           + VFP  NV  AL+T+F+ NVMKF+ G MGAVNG   +G+G
Sbjct: 676 DRVFPSENVISALRTVFNFNVMKFQEGTMGAVNGIRPDGQG 716


>SB_5128| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2102

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = -2

Query: 245  QRDGVHVPLPSATNPFTAPILPPLNF--ITLLSKIVFSAFRTFACGNT-ASVHPDARRNL 75
            +++ V++  P   +P T  IL P N     LLS I  S    F+ GNT +S+H D   NL
Sbjct: 997  KKENVYLDCPFPHSPMTQDILVPYNLQCPELLSGIA-STHLLFSSGNTSSSIHYDGYENL 1055

Query: 74   V 72
            +
Sbjct: 1056 L 1056


>SB_2410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -1

Query: 222 PSFGHKSVHGAHFAPFE--LHHVIVENCFQCFS 130
           P F    +HG H+ P+E  LHH   E   +CF+
Sbjct: 214 PLFDFDQIHGFHWVPYECQLHHYTDEEIKRCFA 246


>SB_26157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1097

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 227 VPLPSATNPFTAPILPPLNFITLLSKI 147
           VPLP A NP+ +P+L P N +  L  +
Sbjct: 428 VPLPIAKNPYMSPLLAPDNMLRTLPPV 454


>SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
 Frame = -3

Query: 232 CTCPFLRPQIRSR--RPFCPL*TSSRYCRKLFSVLFAHSLAGTPLRSI-RTPAGTLWKRT 62
           C  P  RP   S   RP+C       YC  L  +       G PL S+ R PA T+   T
Sbjct: 147 CHSPVDRPYCHSPVDRPYCHSPVDRPYCHSLVVLPLLSLTRGPPLLSLTRGPAPTV---T 203

Query: 61  HQW 53
           H W
Sbjct: 204 HPW 206


>SB_29257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 494

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = -2

Query: 284 PGRT*LRSRPLALQRDGVHVPLPS----ATNPFTAPILPP 177
           PG      RPL+LQRD    PLP       +P T P LPP
Sbjct: 402 PGLPPKPDRPLSLQRDANAPPLPPRHPLRVSPTTPPPLPP 441


>SB_35068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 532

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +1

Query: 640 EISKNRIGNNNKEKTQITFIP 702
           E++  +IG++NKE+ ++TF P
Sbjct: 331 EVNNEKIGDDNKERPKVTFCP 351


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,001,053
Number of Sequences: 59808
Number of extensions: 577450
Number of successful extensions: 1628
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1628
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)