Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0181.Seq
         (804 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-26|CAC48128.1|  922|Caenorhabditis elegans Hypothetical...    40   0.003
AL132876-25|CAH04764.1|  930|Caenorhabditis elegans Hypothetical...    40   0.003
AL132876-9|CAD21661.1|  959|Caenorhabditis elegans Hypothetical ...    40   0.003
AF003385-1|AAB54243.1|  884|Caenorhabditis elegans Hypothetical ...    34   0.14 
Z35597-1|CAA84645.1|  654|Caenorhabditis elegans Hypothetical pr...    28   9.0  

>AL132876-26|CAC48128.1|  922|Caenorhabditis elegans Hypothetical
           protein Y105E8A.10c protein.
          Length = 922

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 19/39 (48%), Positives = 23/39 (58%)
 Frame = +1

Query: 103 EAVFPQANVRKALKTIFDNNVMKFKGGKMGAVNGFVAEG 219
           + + P   VR AL TI+  NV KF  G+MGAVNG    G
Sbjct: 735 DELLPNHMVRSALDTIYRLNVCKFGNGRMGAVNGMKPSG 773


>AL132876-25|CAH04764.1|  930|Caenorhabditis elegans Hypothetical
           protein Y105E8A.10b protein.
          Length = 930

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 19/39 (48%), Positives = 23/39 (58%)
 Frame = +1

Query: 103 EAVFPQANVRKALKTIFDNNVMKFKGGKMGAVNGFVAEG 219
           + + P   VR AL TI+  NV KF  G+MGAVNG    G
Sbjct: 743 DELLPNHMVRSALDTIYRLNVCKFGNGRMGAVNGMKPSG 781


>AL132876-9|CAD21661.1|  959|Caenorhabditis elegans Hypothetical
           protein Y105E8A.10a protein.
          Length = 959

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 19/39 (48%), Positives = 23/39 (58%)
 Frame = +1

Query: 103 EAVFPQANVRKALKTIFDNNVMKFKGGKMGAVNGFVAEG 219
           + + P   VR AL TI+  NV KF  G+MGAVNG    G
Sbjct: 772 DELLPNHMVRSALDTIYRLNVCKFGNGRMGAVNGMKPSG 810


>AF003385-1|AAB54243.1|  884|Caenorhabditis elegans Hypothetical
           protein R08F11.1 protein.
          Length = 884

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +1

Query: 127 VRKALKTIFDNNVMKFKGGKMGAVNGFVAEGR 222
           ++ AL TIF  NV  +  G+ GAVNG++   R
Sbjct: 745 MKSALDTIFKYNVQMYNNGRCGAVNGYLTSER 776


>Z35597-1|CAA84645.1|  654|Caenorhabditis elegans Hypothetical
           protein C36E8.1 protein.
          Length = 654

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 84  QEPCGREHINGYLKNEITTKIRY 16
           Q P GRE +  YLK ++T  + Y
Sbjct: 36  QAPTGREIVENYLKGDVTAAVLY 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,698,025
Number of Sequences: 27780
Number of extensions: 428818
Number of successful extensions: 1153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)