Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0181.Seq
         (804 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.4  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    24   1.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   4.4  
AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.        22   5.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 474  SSTRNALLLHYRNWQGGGIYPCGLT 400
            SST +++LLH+++   GG    G T
Sbjct: 1414 SSTSSSILLHWKSGHNGGASLTGYT 1438


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 474  SSTRNALLLHYRNWQGGGIYPCGLT 400
            SST +++LLH+++   GG    G T
Sbjct: 1410 SSTSSSILLHWKSGHNGGASLTGYT 1434


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 123 ECAKSTENNFRQ*RDEVQRGQNGR 194
           E  K  +N F + + EVQRG  GR
Sbjct: 93  EFGKEYKNGFIKGQSEVQRGPGGR 116


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -1

Query: 477 HSSTRNALLLHYRNWQGGGIYPC-GLT 400
           HS T++  L  Y NW+   +  C GLT
Sbjct: 220 HSKTKSPKLRPYPNWEWHTVGNCDGLT 246


>AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.
          Length = 43

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 676 EKTQITFIPRRSVLATSSGLSPSK 747
           ++TQ   +P R+ LA S GL+ ++
Sbjct: 1   QRTQYLALPERAELAASLGLTQTQ 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,057
Number of Sequences: 438
Number of extensions: 5001
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)